Variant report

Variant	rs2408261
Chromosome Location	chr12:45941433-45941434
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45939862..45941982-chr12:45942145..45944369,2	K562	blood:
2	chr12:45941297..45944696-chr12:46119825..46122754,3	K562	blood:
3	chr12:45932018..45945296-chr12:46116937..46125620,30	MCF-7	breast:
4	chr12:45939592..45943310-chr12:46118770..46124565,10	MCF-7	breast:
5	chr12:45938673..45940532-chr12:45941016..45942628,2	MCF-7	breast:
6	chr12:45937645..45942060-chr12:45942145..45945791,6	K562	blood:
7	chr12:45940816..45942865-chr12:45947485..45949791,2	MCF-7	breast:
8	chr12:45941376..45942308-chr12:46118994..46119772,3	MCF-7	breast:
9	chr12:45940844..45942797-chr12:46119656..46122517,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10736028	1.00[EUR][1000 genomes]
rs11183118	1.00[EUR][1000 genomes]
rs17096106	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17121378	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4269980	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs60290398	1.00[EUR][1000 genomes]
rs61654777	1.00[EUR][1000 genomes]
rs7312766	1.00[EUR][1000 genomes]
rs73286980	0.89[ASN][1000 genomes]
rs73289029	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73289049	1.00[EUR][1000 genomes]
rs73289052	1.00[EUR][1000 genomes]
rs73289060	1.00[EUR][1000 genomes]
rs73289064	1.00[EUR][1000 genomes]
rs7980451	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45938000-45943000	Weak transcription	Dnd41	blood
2	chr12:45940400-45943600	Enhancers	Fetal Thymus	thymus
3	chr12:45941400-45941600	Enhancers	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links