Variant report

Variant	rs7312766
Chromosome Location	chr12:45971205-45971206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10736028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10880822	0.83[ASN][1000 genomes]
rs11183118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096106	1.00[EUR][1000 genomes]
rs17121378	1.00[EUR][1000 genomes]
rs2408261	1.00[EUR][1000 genomes]
rs2544098	0.92[JPT][hapmap]
rs2712580	0.91[JPT][hapmap]
rs2712581	0.92[JPT][hapmap]
rs60290398	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61654777	1.00[EUR][1000 genomes]
rs73289029	1.00[EUR][1000 genomes]
rs73289049	1.00[EUR][1000 genomes]
rs73289052	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73289060	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73289064	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7980451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2751099	chr12:45960118-46043633	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45966800-45975400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr12:45967000-45976400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr12:45967800-45971600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:45968400-45972000	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:45969200-45972200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:45969800-45971400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr12:45969800-45971600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr12:45969800-45971600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:45970200-45972000	Enhancers	Primary B cells from cord blood	blood
10	chr12:45970400-45971400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:45970400-45971800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:45970600-45971600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:45970600-45971800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr12:45970800-45971800	Enhancers	Stomach Mucosa	stomach
15	chr12:45970800-45976000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr12:45971000-45971400	Flanking Active TSS	GM12878-XiMat	blood
17	chr12:45971000-45972200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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