Variant report

Variant	rs10882053
Chromosome Location	chr10:94144405-94144406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10786036	0.91[CEU][hapmap]
rs10882029	0.90[CEU][hapmap]
rs10882039	0.90[CEU][hapmap]
rs10882048	1.00[CHB][hapmap]
rs10882057	0.93[EUR][1000 genomes]
rs10882058	0.93[EUR][1000 genomes]
rs11186955	0.93[EUR][1000 genomes]
rs11186972	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186976	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11594578	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594882	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12220376	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2260311	0.93[EUR][1000 genomes]
rs3980562	0.95[EUR][1000 genomes]
rs6583810	0.85[EUR][1000 genomes]
rs730075	0.90[CEU][hapmap]
rs7897267	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv975013	chr10:94137766-94200367	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94142000-94146600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:94142000-94146600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:94142800-94146600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:94142800-94146800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:94142800-94146800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:94142800-94146800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:94142800-94146800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:94143000-94146800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:94143200-94146600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:94143400-94148600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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