Variant report

Variant	rs7897267
Chromosome Location	chr10:94148800-94148801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10786036	0.90[CEU][hapmap]
rs10882029	0.90[CEU][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap]
rs10882039	0.90[CEU][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap]
rs10882048	1.00[CHB][hapmap]
rs10882053	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882056	0.82[AMR][1000 genomes]
rs10882057	0.94[EUR][1000 genomes]
rs10882058	0.94[EUR][1000 genomes]
rs11186955	0.91[EUR][1000 genomes]
rs11186972	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186974	0.84[AMR][1000 genomes]
rs11186976	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11594578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594882	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12220376	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2260311	0.94[EUR][1000 genomes]
rs3980562	0.94[EUR][1000 genomes]
rs6583810	0.84[EUR][1000 genomes]
rs730075	0.90[CEU][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv975013	chr10:94137766-94200367	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7897267	CYP2C19	cis	cerebellum	SCAN
rs7897267	RNLS	cis	parietal	SCAN
rs7897267	CYP26A1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94148600-94148800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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