Variant report

Variant	rs10882139
Chromosome Location	chr10:94775943-94775944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94774568..94777277-chr10:94777768..94779920,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1097215	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12771031	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2478232	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2486689	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2486690	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4919038	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61863078	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs835259	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs835267	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
5	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
7	chr10:94754400-94785000	Weak transcription	Dnd41	blood
8	chr10:94756800-94776200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr10:94757400-94784000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:94757400-94784400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:94757800-94776000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:94757800-94777200	Weak transcription	HSMM	muscle
14	chr10:94757800-94784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
16	chr10:94762400-94780600	Weak transcription	Primary B cells from cord blood	blood
17	chr10:94763800-94778800	Weak transcription	HUVEC	blood vessel
18	chr10:94764800-94778200	Weak transcription	A549	lung
19	chr10:94766200-94790000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:94766600-94782600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:94768800-94786600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:94770200-94788600	Weak transcription	K562	blood
23	chr10:94771400-94788000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:94772200-94782200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:94772400-94783600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:94772800-94776800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:94772800-94784000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:94772800-94785800	Weak transcription	Pancreas	Pancrea
30	chr10:94773000-94785600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:94773400-94776400	Strong transcription	Primary T cells from cord blood	blood
32	chr10:94773400-94777400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:94773400-94800000	Weak transcription	Lung	lung
34	chr10:94773800-94776200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:94773800-94776400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:94773800-94777200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:94774000-94776600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:94774000-94777400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr10:94774400-94786400	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:94774400-94787600	Weak transcription	Adipose Nuclei	Adipose
41	chr10:94774800-94782400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr10:94775200-94780800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:94775200-94784400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr10:94775200-94791400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:94775400-94786400	Weak transcription	Fetal Intestine Large	intestine
46	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr10:94775600-94776000	Enhancers	Liver	Liver
48	chr10:94775800-94776200	Strong transcription	Fetal Intestine Small	intestine

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