Variant report

Variant	rs12771031
Chromosome Location	chr10:94815076-94815077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94813543..94815385-chr10:94829083..94832030,2	K562	blood:
2	chr10:94786714..94788563-chr10:94813570..94815319,2	MCF-7	breast:
3	chr10:94814471..94816710-chr10:94820982..94822511,2	K562	blood:

Variant related genes	Relation type
ENSG00000187553	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10882139	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1097215	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1326329	0.85[ASN][1000 genomes]
rs1536329	0.85[ASN][1000 genomes]
rs1538648	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478232	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2486689	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2486690	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4919038	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61863078	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68040629	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835250	0.85[ASN][1000 genomes]
rs835259	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs835267	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs860668	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
3	chr10:94787200-94817600	Weak transcription	Dnd41	blood
4	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
6	chr10:94788400-94815800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:94792600-94819600	Weak transcription	Aorta	Aorta
8	chr10:94792600-94819800	Weak transcription	HSMMtube	muscle
9	chr10:94795600-94817800	Weak transcription	Fetal Intestine Small	intestine
10	chr10:94795800-94819600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:94799800-94817000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:94800000-94818400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:94800800-94817600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:94800800-94818000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:94801000-94816600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:94801400-94818800	Weak transcription	Primary T cells from cord blood	blood
17	chr10:94801800-94820200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:94803600-94817600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:94803600-94818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:94804000-94819800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:94804200-94821000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:94804600-94817800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:94806200-94815800	Weak transcription	Primary B cells from cord blood	blood
24	chr10:94806200-94816600	Weak transcription	HUVEC	blood vessel
25	chr10:94806200-94821000	Weak transcription	Gastric	stomach
26	chr10:94807800-94819800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:94808000-94821000	Weak transcription	Pancreas	Pancrea
28	chr10:94808200-94815600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:94809000-94819400	Weak transcription	Spleen	Spleen
30	chr10:94809600-94817800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:94809800-94818600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:94811200-94815600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:94811800-94815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:94811800-94825000	Weak transcription	HepG2	liver
35	chr10:94812000-94819200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:94812200-94815200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:94812200-94815400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:94812400-94817800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:94814400-94816000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr10:94814600-94817800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:94815000-94816400	Enhancers	HUES64 Cell Line	embryonic stem cell

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