Variant report

Variant	rs835250
Chromosome Location	chr10:94747153-94747154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94744689..94747532-chr10:94748768..94751037,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1033976	0.82[EUR][1000 genomes]
rs10466167	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736071	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736072	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10748586	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10786057	0.81[EUR][1000 genomes]
rs1097215	0.95[ASN][1000 genomes]
rs12771031	0.85[ASN][1000 genomes]
rs1326329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326331	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1326332	0.82[EUR][1000 genomes]
rs1409387	0.82[EUR][1000 genomes]
rs1536329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536330	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1538648	0.85[ASN][1000 genomes]
rs2025730	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2094232	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2148361	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2182451	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2246370	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2246382	0.81[EUR][1000 genomes]
rs2250393	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2478232	0.95[ASN][1000 genomes]
rs2486689	0.95[ASN][1000 genomes]
rs2486690	0.95[ASN][1000 genomes]
rs2490732	0.81[EUR][1000 genomes]
rs2490733	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2490740	1.00[AFR][1000 genomes]
rs2490742	1.00[AFR][1000 genomes]
rs2497323	1.00[AFR][1000 genomes]
rs2497326	1.00[AFR][1000 genomes]
rs2497327	1.00[AFR][1000 genomes]
rs2497339	0.81[EUR][1000 genomes]
rs4517429	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4919038	0.95[ASN][1000 genomes]
rs4933241	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4933242	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4933752	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61863078	0.86[ASN][1000 genomes]
rs6583846	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6583848	0.87[EUR][1000 genomes]
rs68040629	0.85[ASN][1000 genomes]
rs7070025	0.82[EUR][1000 genomes]
rs7078376	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7082382	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7089179	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7477130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7893270	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7894145	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7897839	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7909191	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7909581	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7913340	0.85[EUR][1000 genomes]
rs7914859	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs835259	0.91[ASN][1000 genomes]
rs835267	0.91[ASN][1000 genomes]
rs860668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633695	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs973733	0.82[EUR][1000 genomes]
rs980204	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
2	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
4	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
9	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:94734200-94748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:94736000-94753600	Weak transcription	Gastric	stomach
16	chr10:94736800-94748800	Weak transcription	K562	blood
17	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
18	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel
19	chr10:94746400-94753000	Weak transcription	Primary T cells from cord blood	blood

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