Variant report

Variant	rs7897839
Chromosome Location	chr10:94684433-94684434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1033976	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10466167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10736071	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10736072	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10748586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10786057	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1326329	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1326331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1326332	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1409387	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1536329	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1536330	0.81[EUR][1000 genomes]
rs2025730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2094232	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2148361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2182451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2246370	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2246382	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2246701	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2250393	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2490732	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2490733	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2490740	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2490742	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2497323	1.00[AFR][1000 genomes]
rs2497326	1.00[AFR][1000 genomes]
rs2497327	1.00[AFR][1000 genomes]
rs2497339	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2497348	0.80[EUR][1000 genomes]
rs4517429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4933241	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4933242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4933752	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6583846	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6583848	0.94[EUR][1000 genomes]
rs7070025	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7078376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7082382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7089179	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7477130	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7893270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7894145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7909191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7909581	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7913340	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7914859	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs835250	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs860668	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9633695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs973733	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs980204	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
2	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
3	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:94652600-94718000	Weak transcription	Ovary	ovary
5	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
6	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
8	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
9	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
11	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
12	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
16	chr10:94658600-94725800	Weak transcription	Lung	lung
17	chr10:94661800-94688800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:94662400-94688400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:94662600-94689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:94662800-94688200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:94664400-94693800	Weak transcription	HepG2	liver
23	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:94667400-94688000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:94667400-94688600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
27	chr10:94672000-94716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:94673400-94688400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:94674800-94688600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:94674800-94724600	Weak transcription	HSMM	muscle
31	chr10:94675000-94708600	Weak transcription	K562	blood
32	chr10:94676400-94687000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:94676400-94706400	Weak transcription	Thymus	Thymus
34	chr10:94679400-94706200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:94680400-94688800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:94680600-94712800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:94680800-94688200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:94680800-94688600	Weak transcription	A549	lung
39	chr10:94680800-94688800	Weak transcription	Liver	Liver
40	chr10:94680800-94708000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:94681000-94685200	Weak transcription	Fetal Kidney	kidney
42	chr10:94681000-94687200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr10:94681000-94687400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:94681000-94687400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr10:94681000-94687600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:94681000-94688000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:94681000-94689600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:94681000-94707600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:94681000-94717000	Weak transcription	Brain Anterior Caudate	brain
50	chr10:94681200-94688000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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