Variant report

Variant	rs10786057
Chromosome Location	chr10:94655476-94655477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94652243..94655059-chr10:94655281..94657165,2	K562	blood:
2	chr10:94653732..94656423-chr10:94657725..94660166,2	K562	blood:
3	chr10:94654369..94656417-chr10:94660704..94662374,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1033976	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736071	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736072	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10748586	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.85[EUR][1000 genomes]
rs1326329	0.81[EUR][1000 genomes]
rs1326331	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326332	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536329	0.80[EUR][1000 genomes]
rs1960367	0.85[AMR][1000 genomes]
rs2025730	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094232	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148361	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182451	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246370	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933241	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933749	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583846	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583848	0.82[EUR][1000 genomes]
rs7069070	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078376	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082382	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089179	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477130	0.81[EUR][1000 genomes]
rs7893270	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894145	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897839	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7909191	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909581	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913340	1.00[ASN][1000 genomes]
rs7914859	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835250	0.81[EUR][1000 genomes]
rs860668	0.81[EUR][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973733	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980204	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
4	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:94650600-94656200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:94650800-94655600	Enhancers	Fetal Intestine Small	intestine
8	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:94652400-94656400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:94652400-94656800	Weak transcription	Adipose Nuclei	Adipose
12	chr10:94652400-94657000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:94652400-94657200	Weak transcription	Aorta	Aorta
14	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
15	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
18	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
19	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
20	chr10:94652600-94656200	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:94652600-94656400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:94652600-94656400	Weak transcription	K562	blood
23	chr10:94652600-94656800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:94652600-94656800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:94652600-94657000	Weak transcription	Lung	lung
26	chr10:94652600-94657200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:94652600-94657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:94652600-94663800	Weak transcription	Liver	Liver
29	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
30	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
31	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
32	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
35	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
36	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
37	chr10:94652600-94718000	Weak transcription	Ovary	ovary
38	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
39	chr10:94652800-94656400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:94652800-94656600	Weak transcription	Colon Smooth Muscle	Colon
41	chr10:94652800-94657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
44	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:94653000-94656800	Weak transcription	Dnd41	blood
46	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
47	chr10:94653200-94656800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr10:94653200-94662200	Weak transcription	HepG2	liver
49	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
50	chr10:94653400-94655600	Enhancers	H1 Cell Line	embryonic stem cell

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