Variant report

Variant	rs2422070
Chromosome Location	chr10:94578344-94578345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94574066..94576298-chr10:94578242..94580512,3	K562	blood:
2	chr10:94576177..94578634-chr10:94580868..94583039,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1033976	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	1.00[ASN][1000 genomes]
rs10736071	1.00[ASN][1000 genomes]
rs10748586	0.96[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs10786057	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1326331	1.00[ASN][1000 genomes]
rs1326332	0.95[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	1.00[CEU][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025730	0.96[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs2094232	1.00[ASN][1000 genomes]
rs2148361	0.96[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs2182451	0.95[CEU][hapmap];1.00[ASN][1000 genomes]
rs2246370	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	1.00[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	1.00[CEU][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497325	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs2497326	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	1.00[CEU][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	1.00[ASN][1000 genomes]
rs4933241	1.00[ASN][1000 genomes]
rs4933242	0.96[CEU][hapmap];1.00[ASN][1000 genomes]
rs4933749	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	1.00[ASN][1000 genomes]
rs6583846	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7069070	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.84[ASW][hapmap];0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];1.00[ASN][1000 genomes]
rs7078376	1.00[ASN][1000 genomes]
rs7082382	1.00[ASN][1000 genomes]
rs7089179	1.00[ASN][1000 genomes]
rs7893270	1.00[ASN][1000 genomes]
rs7894145	0.96[CEU][hapmap];1.00[ASN][1000 genomes]
rs7909191	1.00[ASN][1000 genomes]
rs7909581	1.00[ASN][1000 genomes]
rs7913340	0.84[CEU][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs7914859	1.00[ASN][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	1.00[ASN][1000 genomes]
rs973733	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2422070	CEP55	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94573800-94580400	Enhancers	HUVEC	blood vessel
2	chr10:94574400-94581400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:94575000-94581200	Weak transcription	K562	blood
4	chr10:94575200-94581400	Weak transcription	Adipose Nuclei	Adipose
5	chr10:94576200-94581400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:94576200-94581600	Weak transcription	NHDF-Ad	bronchial
7	chr10:94576400-94579600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:94576400-94581400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:94577000-94581400	Weak transcription	NHLF	lung
10	chr10:94577600-94578600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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