Variant report

Variant	rs1326332
Chromosome Location	chr10:94641662-94641663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr10:94641497-94641825	K562	blood:	n/a	n/a
2	YY1	chr10:94641566-94641737	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94633905..94635753-chr10:94639466..94642553,3	K562	blood:
2	chr10:94607903..94609517-chr10:94641022..94642633,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225118	TF binding region
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1033976	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736071	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736072	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10748586	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786057	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.86[EUR][1000 genomes]
rs1326329	0.82[EUR][1000 genomes]
rs1326331	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	0.95[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536329	0.81[EUR][1000 genomes]
rs1960367	0.88[AMR][1000 genomes]
rs2025730	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094232	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148361	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182451	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246370	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	0.95[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933241	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933749	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583846	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583848	0.82[EUR][1000 genomes]
rs7069070	0.95[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.84[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078376	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082382	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089179	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477130	0.82[EUR][1000 genomes]
rs7893270	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894145	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897839	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7909191	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909581	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913340	0.80[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914859	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835250	0.82[EUR][1000 genomes]
rs860668	0.82[EUR][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973733	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980204	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
5	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
7	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
8	chr10:94640200-94646000	Weak transcription	HUVEC	blood vessel
9	chr10:94640200-94647600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:94640600-94641800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:94640600-94644200	Weak transcription	A549	lung
12	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:94641200-94646200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:94641400-94641800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood

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