Variant report

Variant	rs2497322
Chromosome Location	chr10:94591607-94591608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94351725..94353301-chr10:94589609..94592418,2	K562	blood:
2	chr10:94500581..94502660-chr10:94591143..94593258,2	K562	blood:
3	chr10:94449603..94452740-chr10:94589464..94592452,3	K562	blood:
4	chr10:94590260..94593041-chr10:94593935..94595918,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1033976	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	1.00[ASN][1000 genomes]
rs10736071	1.00[ASN][1000 genomes]
rs10748586	0.96[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs10786057	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.85[EUR][1000 genomes]
rs1326331	1.00[ASN][1000 genomes]
rs1326332	0.95[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025730	0.96[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs2094232	1.00[ASN][1000 genomes]
rs2148361	0.96[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs2182451	0.95[CEU][hapmap];1.00[ASN][1000 genomes]
rs2246370	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	1.00[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.88[CEU][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	1.00[CEU][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	1.00[CEU][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	1.00[CEU][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497323	1.00[CEU][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.94[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	1.00[ASN][1000 genomes]
rs4933241	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	0.96[CEU][hapmap];1.00[ASN][1000 genomes]
rs4933749	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	1.00[ASN][1000 genomes]
rs6583846	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069070	1.00[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.88[CEU][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078376	1.00[ASN][1000 genomes]
rs7082382	1.00[ASN][1000 genomes]
rs7089179	1.00[ASN][1000 genomes]
rs7893270	1.00[ASN][1000 genomes]
rs7894145	0.96[CEU][hapmap];1.00[ASN][1000 genomes]
rs7909191	1.00[ASN][1000 genomes]
rs7909581	1.00[ASN][1000 genomes]
rs7913340	0.84[CEU][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914859	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	1.00[ASN][1000 genomes]
rs973733	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2497322	CEP55	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94581600-94592800	Weak transcription	Lung	lung
2	chr10:94582800-94592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:94585600-94593000	Weak transcription	Psoas Muscle	Psoas
4	chr10:94588200-94593000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:94589000-94598000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:94589400-94592800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:94589400-94599200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:94590600-94592800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:94590800-94592600	Active TSS	HUVEC	blood vessel
10	chr10:94590800-94592800	Active TSS	K562	blood
11	chr10:94591000-94593800	Weak transcription	Ovary	ovary
12	chr10:94591000-94598800	Weak transcription	Right Atrium	heart
13	chr10:94591200-94591800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:94591200-94592000	Enhancers	Primary B cells from cord blood	blood
15	chr10:94591200-94592000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:94591200-94592000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:94591200-94592000	Active TSS	Placenta	Placenta
18	chr10:94591200-94592200	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:94591200-94593000	Enhancers	Primary T cells from cord blood	blood
20	chr10:94591600-94592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:94591600-94592800	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:94591600-94593200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:94591600-94593200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:94591600-94593600	Weak transcription	Adipose Nuclei	Adipose
25	chr10:94591600-94597000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood

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