Variant report

Variant	rs2497331
Chromosome Location	chr10:94608939-94608940
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
3	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
4	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
5	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
6	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction
ENSG00000207496	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1033976	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	1.00[ASN][1000 genomes]
rs10736071	1.00[ASN][1000 genomes]
rs10748586	1.00[ASN][1000 genomes]
rs10786057	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.81[EUR][1000 genomes]
rs1326331	1.00[ASN][1000 genomes]
rs1326332	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025730	1.00[ASN][1000 genomes]
rs2094232	1.00[ASN][1000 genomes]
rs2148361	1.00[ASN][1000 genomes]
rs2182451	1.00[ASN][1000 genomes]
rs2246370	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	1.00[ASN][1000 genomes]
rs4933241	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	1.00[ASN][1000 genomes]
rs4933749	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	1.00[ASN][1000 genomes]
rs6583846	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069070	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078376	1.00[ASN][1000 genomes]
rs7082382	1.00[ASN][1000 genomes]
rs7089179	1.00[ASN][1000 genomes]
rs7893270	1.00[ASN][1000 genomes]
rs7894145	1.00[ASN][1000 genomes]
rs7909191	1.00[ASN][1000 genomes]
rs7909581	1.00[ASN][1000 genomes]
rs7913340	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914859	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	1.00[ASN][1000 genomes]
rs973733	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
2	chr10:94607400-94609400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:94607600-94609000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:94607600-94609000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr10:94607600-94609000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:94607600-94609000	Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr10:94607600-94609000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:94607600-94609000	Active TSS	Brain Hippocampus Middle	brain
9	chr10:94607600-94609000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr10:94607600-94609200	Active TSS	Brain Anterior Caudate	brain
11	chr10:94607600-94609200	Active TSS	Brain Germinal Matrix	brain
12	chr10:94607600-94609200	Active TSS	Brain Substantia Nigra	brain
13	chr10:94607600-94609200	Active TSS	Rectal Smooth Muscle	rectum
14	chr10:94607600-94609400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:94607600-94609400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr10:94607600-94609400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr10:94607600-94609400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:94607600-94609400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:94607600-94609400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:94607600-94609400	Active TSS	Brain Cingulate Gyrus	brain
21	chr10:94607600-94609400	Active TSS	Colon Smooth Muscle	Colon
22	chr10:94607600-94609600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr10:94607600-94609600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:94607600-94609600	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr10:94607600-94609600	Active TSS	Stomach Smooth Muscle	stomach
26	chr10:94607600-94609600	Active TSS	HepG2	liver
27	chr10:94607800-94609000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:94607800-94609000	Active TSS	H9 Cell Line	embryonic stem cell
29	chr10:94607800-94609000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:94607800-94609000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:94607800-94609000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:94607800-94609000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:94607800-94609200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:94607800-94609200	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr10:94607800-94609200	Active TSS	Aorta	Aorta
36	chr10:94607800-94609200	Active TSS	Colonic Mucosa	Colon
37	chr10:94607800-94609200	Active TSS	Esophagus	oesophagus
38	chr10:94607800-94609200	Active TSS	Fetal Brain Female	brain
39	chr10:94607800-94609200	Active TSS	Gastric	stomach
40	chr10:94607800-94609200	Active TSS	Left Ventricle	heart
41	chr10:94607800-94609200	Active TSS	Lung	lung
42	chr10:94607800-94609200	Active TSS	Ovary	ovary
43	chr10:94607800-94609200	Active TSS	Pancreas	Pancrea
44	chr10:94607800-94609200	Active TSS	Small Intestine	intestine
45	chr10:94607800-94609200	Active TSS	A549	lung
46	chr10:94607800-94609200	Active TSS	NHLF	lung
47	chr10:94607800-94609400	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr10:94607800-94609400	Active TSS	NHDF-Ad	bronchial
49	chr10:94607800-94609600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:94607800-94609600	Active TSS	Fetal Stomach	stomach

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