Variant report

Variant	rs7070025
Chromosome Location	chr10:94665632-94665633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr10:94665207-94665787	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
EXOC6	TF binding region

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1033976	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736071	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736072	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10748586	0.83[CEU][hapmap];0.96[GIH][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786057	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812999	1.00[YRI][hapmap]
rs11814666	1.00[YRI][hapmap]
rs11814743	1.00[YRI][hapmap]
rs11817137	1.00[YRI][hapmap]
rs11818622	1.00[YRI][hapmap]
rs1326329	0.83[EUR][1000 genomes]
rs1326331	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326332	0.84[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	0.88[CEU][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536329	0.82[EUR][1000 genomes]
rs2025730	0.83[CEU][hapmap];0.96[GIH][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094232	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148361	0.83[CEU][hapmap];0.96[GIH][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182451	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246370	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	0.88[CEU][hapmap];0.96[GIH][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	1.00[ASN][1000 genomes]
rs2422072	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	0.88[CEU][hapmap];0.93[GIH][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	0.88[CEU][hapmap];0.93[GIH][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	0.88[CEU][hapmap];0.93[GIH][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	0.88[CEU][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	0.88[CEU][hapmap];0.93[GIH][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs2497324	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs2497326	1.00[ASN][1000 genomes]
rs2497327	1.00[ASN][1000 genomes]
rs2497331	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	0.88[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	0.88[CEU][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4244352	1.00[YRI][hapmap]
rs4517429	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933241	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933749	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57118208	0.81[AFR][1000 genomes]
rs57142156	0.81[AFR][1000 genomes]
rs60862172	0.81[AFR][1000 genomes]
rs61862264	0.81[AFR][1000 genomes]
rs61862266	0.81[AFR][1000 genomes]
rs61862267	0.81[AFR][1000 genomes]
rs61862268	0.81[AFR][1000 genomes]
rs61862272	0.81[AFR][1000 genomes]
rs61862274	0.81[AFR][1000 genomes]
rs61862282	0.81[AFR][1000 genomes]
rs61862283	0.81[AFR][1000 genomes]
rs61862284	0.81[AFR][1000 genomes]
rs61862287	0.81[AFR][1000 genomes]
rs61862289	0.81[AFR][1000 genomes]
rs61862317	0.81[AFR][1000 genomes]
rs6583846	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583848	0.87[EUR][1000 genomes]
rs7069070	0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];1.00[ASN][1000 genomes]
rs7078376	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081634	1.00[YRI][hapmap]
rs7082382	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089179	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092086	0.81[AFR][1000 genomes]
rs7477130	0.83[EUR][1000 genomes]
rs7893270	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894145	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897839	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7903878	0.81[AFR][1000 genomes]
rs7904089	0.81[AFR][1000 genomes]
rs7909191	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909581	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913340	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914859	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835236	1.00[YRI][hapmap]
rs835237	1.00[YRI][hapmap]
rs835239	1.00[YRI][hapmap]
rs835242	1.00[YRI][hapmap]
rs835243	1.00[YRI][hapmap]
rs835246	1.00[YRI][hapmap]
rs835250	0.82[EUR][1000 genomes]
rs835254	1.00[YRI][hapmap]
rs860668	0.83[EUR][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973733	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980204	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv1847300	chr10:94660133-94670849	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
3	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
4	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
5	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
6	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
7	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
11	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
12	chr10:94652600-94718000	Weak transcription	Ovary	ovary
13	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
14	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
16	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
18	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
19	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
20	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:94655200-94667000	Weak transcription	Fetal Intestine Large	intestine
25	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
27	chr10:94655400-94672800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:94655600-94667800	Weak transcription	Fetal Intestine Small	intestine
29	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
30	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
31	chr10:94656800-94674000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
33	chr10:94657400-94673800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:94657800-94667000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:94657800-94669600	Weak transcription	K562	blood
36	chr10:94657800-94674200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:94657800-94680200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
42	chr10:94658200-94667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:94658200-94669600	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:94658200-94682800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:94658600-94667200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:94658600-94725800	Weak transcription	Lung	lung
47	chr10:94660200-94667000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr10:94660400-94669200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:94661800-94666600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:94661800-94672400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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