Variant report

Variant	rs11812999
Chromosome Location	chr10:94618390-94618391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94607215..94609931-chr10:94617680..94621833,3	MCF-7	breast:
2	chr10:94616972..94619290-chr10:94622420..94624220,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11814666	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11814743	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11815289	0.92[AFR][1000 genomes]
rs11815696	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11815947	0.92[AFR][1000 genomes]
rs11816069	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11817137	1.00[YRI][hapmap]
rs11818299	0.92[AFR][1000 genomes]
rs11818622	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11818640	1.00[AMR][1000 genomes]
rs11818653	0.92[AFR][1000 genomes]
rs11818870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818946	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1222603	1.00[AMR][1000 genomes]
rs17093817	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108007	1.00[AMR][1000 genomes]
rs2486688	1.00[AMR][1000 genomes]
rs2486691	1.00[AMR][1000 genomes]
rs2486692	1.00[AMR][1000 genomes]
rs2488063	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs2490731	0.85[AFR][1000 genomes]
rs2490734	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490737	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490738	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35903569	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4244352	1.00[AMR][1000 genomes]
rs4485042	1.00[AMR][1000 genomes]
rs4600123	0.92[AFR][1000 genomes]
rs57118208	0.85[AFR][1000 genomes]
rs57142156	0.85[AFR][1000 genomes]
rs57768338	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59504481	0.85[AFR][1000 genomes]
rs60862172	0.85[AFR][1000 genomes]
rs60978227	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61057049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61860819	0.85[AFR][1000 genomes]
rs61860820	0.85[AFR][1000 genomes]
rs61860822	0.92[AFR][1000 genomes]
rs61860823	0.92[AFR][1000 genomes]
rs61860824	0.92[AFR][1000 genomes]
rs61860825	0.92[AFR][1000 genomes]
rs61860826	0.92[AFR][1000 genomes]
rs61860828	0.92[AFR][1000 genomes]
rs61860832	0.92[AFR][1000 genomes]
rs61860836	0.92[AFR][1000 genomes]
rs61860837	0.92[AFR][1000 genomes]
rs61860839	0.92[AFR][1000 genomes]
rs61860840	0.92[AFR][1000 genomes]
rs61860859	0.92[AFR][1000 genomes]
rs61862262	0.85[AFR][1000 genomes]
rs61862264	0.85[AFR][1000 genomes]
rs61862266	0.85[AFR][1000 genomes]
rs61862267	0.85[AFR][1000 genomes]
rs61862268	0.85[AFR][1000 genomes]
rs61862269	0.92[AFR][1000 genomes]
rs61862272	0.85[AFR][1000 genomes]
rs61862274	0.85[AFR][1000 genomes]
rs61862282	0.85[AFR][1000 genomes]
rs61862283	0.85[AFR][1000 genomes]
rs61862284	0.85[AFR][1000 genomes]
rs61862287	0.85[AFR][1000 genomes]
rs61862289	0.85[AFR][1000 genomes]
rs61862317	0.85[AFR][1000 genomes]
rs61862318	0.81[AFR][1000 genomes]
rs7070025	1.00[YRI][hapmap]
rs7081634	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088919	1.00[AMR][1000 genomes]
rs7092086	0.85[AFR][1000 genomes]
rs7098092	1.00[AMR][1000 genomes]
rs7903878	0.85[AFR][1000 genomes]
rs7904089	0.85[AFR][1000 genomes]
rs7909248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913340	1.00[YRI][hapmap]
rs7921198	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835234	1.00[AMR][1000 genomes]
rs835235	1.00[AMR][1000 genomes]
rs835236	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs835237	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs835239	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs835242	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs835243	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs835244	1.00[AMR][1000 genomes]
rs835246	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs835248	1.00[AMR][1000 genomes]
rs835249	1.00[AMR][1000 genomes]
rs835251	1.00[AMR][1000 genomes]
rs835252	1.00[AMR][1000 genomes]
rs835253	1.00[AMR][1000 genomes]
rs835254	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs835255	1.00[AMR][1000 genomes]
rs844340	1.00[AMR][1000 genomes]
rs865612	1.00[AMR][1000 genomes]
rs9419755	1.00[AMR][1000 genomes]
rs9419756	1.00[AMR][1000 genomes]
rs9419757	1.00[AMR][1000 genomes]
rs9419758	1.00[AMR][1000 genomes]
rs9419759	1.00[AMR][1000 genomes]
rs9420601	1.00[AMR][1000 genomes]
rs9420602	1.00[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609200-94621000	Weak transcription	Pancreas	Pancrea
2	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
3	chr10:94609800-94619000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:94616800-94622000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:94617400-94619800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr10:94617600-94619800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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