Variant report

Variant	rs61860840
Chromosome Location	chr10:94639473-94639474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94515577..94518061-chr10:94639001..94640568,2	K562	blood:
2	chr10:94333639..94335354-chr10:94637611..94639541,2	MCF-7	breast:
3	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
4	chr10:94633905..94635753-chr10:94639466..94642553,3	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11812999	0.92[AFR][1000 genomes]
rs11814666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815696	0.85[AFR][1000 genomes]
rs11815947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816069	0.85[AFR][1000 genomes]
rs11817137	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818870	0.85[AFR][1000 genomes]
rs11818946	0.85[AFR][1000 genomes]
rs2490731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490734	0.81[AFR][1000 genomes]
rs2490735	0.81[AFR][1000 genomes]
rs2490737	0.81[AFR][1000 genomes]
rs2490738	0.81[AFR][1000 genomes]
rs35903569	0.85[AFR][1000 genomes]
rs41290178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	0.84[EUR][1000 genomes]
rs4600123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57768338	0.85[AFR][1000 genomes]
rs59504481	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60978227	0.85[AFR][1000 genomes]
rs61057049	0.85[AFR][1000 genomes]
rs61860812	0.92[EUR][1000 genomes]
rs61860813	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	0.92[EUR][1000 genomes]
rs61860832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	0.84[EUR][1000 genomes]
rs61862338	0.84[EUR][1000 genomes]
rs61862339	0.84[EUR][1000 genomes]
rs61862340	0.84[EUR][1000 genomes]
rs61862341	0.84[EUR][1000 genomes]
rs61862344	0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7081634	0.85[AFR][1000 genomes]
rs7092086	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909248	0.85[AFR][1000 genomes]
rs974055	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:94633200-94640000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:94633200-94640200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
6	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
7	chr10:94636000-94641000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:94636800-94639800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:94636800-94640200	Enhancers	HUVEC	blood vessel
10	chr10:94637000-94639800	Weak transcription	A549	lung
11	chr10:94637200-94639800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:94637400-94639800	Weak transcription	Liver	Liver
14	chr10:94637400-94640000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:94638200-94640000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:94638200-94640000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:94638400-94640200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
19	chr10:94638600-94640000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:94638600-94640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:94638600-94641400	Weak transcription	K562	blood
22	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
23	chr10:94639200-94640200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:94639200-94640400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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