Variant report

Variant	rs61860823
Chromosome Location	chr10:94619735-94619736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94607215..94609931-chr10:94617680..94621833,3	MCF-7	breast:
2	chr10:94618505..94620451-chr10:94621088..94623863,2	K562	blood:
3	chr10:94351303..94353239-chr10:94619055..94621307,2	MCF-7	breast:
4	chr10:94589013..94590619-chr10:94619184..94621035,2	K562	blood:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11812999	0.92[AFR][1000 genomes]
rs11814666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815696	0.85[AFR][1000 genomes]
rs11815947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816069	0.85[AFR][1000 genomes]
rs11817137	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818870	0.85[AFR][1000 genomes]
rs11818946	0.85[AFR][1000 genomes]
rs2490731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490734	0.81[AFR][1000 genomes]
rs2490735	0.81[AFR][1000 genomes]
rs2490737	0.81[AFR][1000 genomes]
rs2490738	0.81[AFR][1000 genomes]
rs35903569	0.85[AFR][1000 genomes]
rs41290178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	0.84[EUR][1000 genomes]
rs4600123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57768338	0.85[AFR][1000 genomes]
rs59504481	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60978227	0.85[AFR][1000 genomes]
rs61057049	0.85[AFR][1000 genomes]
rs61860812	0.92[EUR][1000 genomes]
rs61860813	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	0.92[EUR][1000 genomes]
rs61860832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	0.84[EUR][1000 genomes]
rs61862338	0.84[EUR][1000 genomes]
rs61862339	0.84[EUR][1000 genomes]
rs61862340	0.84[EUR][1000 genomes]
rs61862341	0.84[EUR][1000 genomes]
rs61862344	0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7081634	0.85[AFR][1000 genomes]
rs7092086	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909248	0.85[AFR][1000 genomes]
rs974055	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609200-94621000	Weak transcription	Pancreas	Pancrea
2	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
3	chr10:94616800-94622000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94617400-94619800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr10:94617600-94619800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:94618600-94619800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:94618600-94624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:94618800-94619800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr10:94618800-94619800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr10:94619000-94619800	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr10:94619000-94619800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr10:94619000-94619800	ZNF genes & repeats	K562	blood
13	chr10:94619000-94622800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:94619200-94619800	ZNF genes & repeats	A549	lung
15	chr10:94619400-94619800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:94619400-94619800	Enhancers	Gastric	stomach
17	chr10:94619400-94621000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:94619400-94624400	Weak transcription	Primary T cells from cord blood	blood
19	chr10:94619600-94619800	Strong transcription	Dnd41	blood
20	chr10:94619600-94622000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:94619600-94624200	Weak transcription	HUVEC	blood vessel

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