Variant report

Variant	rs61860819
Chromosome Location	chr10:94615205-94615206
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94610633..94612641-chr10:94614959..94617322,2	K562	blood:
2	chr10:94606549..94609808-chr10:94611902..94615448,5	K562	blood:
3	chr10:94613465..94615830-chr10:94636991..94639878,2	K562	blood:
4	chr10:94607004..94609922-chr10:94613918..94616697,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000225118	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11812999	0.85[AFR][1000 genomes]
rs11814666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815947	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490734	0.88[AFR][1000 genomes]
rs2490735	0.88[AFR][1000 genomes]
rs2490737	0.88[AFR][1000 genomes]
rs2490738	0.88[AFR][1000 genomes]
rs35903569	0.92[AFR][1000 genomes]
rs41290178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	0.84[EUR][1000 genomes]
rs4600123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59504481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60978227	0.92[AFR][1000 genomes]
rs61860812	0.92[EUR][1000 genomes]
rs61860813	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	0.92[EUR][1000 genomes]
rs61860832	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	0.84[EUR][1000 genomes]
rs61862338	0.84[EUR][1000 genomes]
rs61862339	0.84[EUR][1000 genomes]
rs61862340	0.84[EUR][1000 genomes]
rs61862341	0.84[EUR][1000 genomes]
rs61862344	0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7092086	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609200-94621000	Weak transcription	Pancreas	Pancrea
2	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
3	chr10:94609800-94619000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:94611000-94615400	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links