Variant report

Variant	rs61862264
Chromosome Location	chr10:94657588-94657589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94653707..94655226-chr10:94655974..94658255,2	MCF-7	breast:
2	chr10:94657045..94660020-chr10:94660295..94662029,2	MCF-7	breast:
3	chr10:94646541..94648160-chr10:94657093..94659563,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11812999	0.85[AFR][1000 genomes]
rs11814666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815696	0.92[AFR][1000 genomes]
rs11815947	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816069	0.92[AFR][1000 genomes]
rs11817137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818870	0.92[AFR][1000 genomes]
rs11818946	0.92[AFR][1000 genomes]
rs17093817	0.85[AFR][1000 genomes]
rs2490731	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	0.84[EUR][1000 genomes]
rs4600123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57768338	0.92[AFR][1000 genomes]
rs59504481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61057049	0.92[AFR][1000 genomes]
rs61860812	0.92[EUR][1000 genomes]
rs61860813	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	0.92[EUR][1000 genomes]
rs61860832	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	0.84[EUR][1000 genomes]
rs61862338	0.84[EUR][1000 genomes]
rs61862339	0.84[EUR][1000 genomes]
rs61862340	0.84[EUR][1000 genomes]
rs61862341	0.84[EUR][1000 genomes]
rs61862344	0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs7070025	0.81[AFR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7081634	0.92[AFR][1000 genomes]
rs7092086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909248	0.92[AFR][1000 genomes]
rs7913340	0.81[AFR][1000 genomes]
rs7921198	0.85[AFR][1000 genomes]
rs974055	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
5	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
8	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
9	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
10	chr10:94652600-94657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:94652600-94663800	Weak transcription	Liver	Liver
12	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
13	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
14	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
15	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
18	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
19	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
20	chr10:94652600-94718000	Weak transcription	Ovary	ovary
21	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
22	chr10:94652800-94657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
25	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
27	chr10:94653200-94662200	Weak transcription	HepG2	liver
28	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
29	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
30	chr10:94654000-94662200	Strong transcription	HUVEC	blood vessel
31	chr10:94654400-94660600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:94655000-94658600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:94655000-94658800	Weak transcription	A549	lung
36	chr10:94655000-94660800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:94655200-94658200	Weak transcription	Brain Substantia Nigra	brain
40	chr10:94655200-94659400	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:94655200-94661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:94655200-94667000	Weak transcription	Fetal Intestine Large	intestine
43	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
45	chr10:94655400-94658400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:94655400-94658400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:94655400-94658400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:94655400-94658800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:94655400-94672800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:94655600-94661400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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