Variant report

Variant	rs61860818
Chromosome Location	chr10:94614651-94614652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94606549..94609808-chr10:94611902..94615448,5	K562	blood:
2	chr10:94613465..94615830-chr10:94636991..94639878,2	K562	blood:
3	chr10:94607004..94609922-chr10:94613918..94616697,4	MCF-7	breast:
4	chr10:94447842..94450482-chr10:94613135..94614860,2	K562	blood:

Variant related genes	Relation type
ENSG00000225118	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11814666	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815947	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817137	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490731	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4600123	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59504481	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860812	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	1.00[EUR][1000 genomes]
rs61860828	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61860832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862331	1.00[AFR][1000 genomes]
rs61862338	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862339	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862340	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862341	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862344	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs61862789	1.00[AFR][1000 genomes]
rs61862790	1.00[AFR][1000 genomes]
rs61862792	1.00[AFR][1000 genomes]
rs61862793	1.00[AFR][1000 genomes]
rs61862816	1.00[AFR][1000 genomes]
rs61862817	1.00[AFR][1000 genomes]
rs61862818	1.00[AFR][1000 genomes]
rs61862821	1.00[AFR][1000 genomes]
rs61862823	1.00[AFR][1000 genomes]
rs61862824	1.00[AFR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7092086	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974055	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609200-94614800	Weak transcription	Lung	lung
2	chr10:94609200-94621000	Weak transcription	Pancreas	Pancrea
3	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
4	chr10:94609800-94619000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:94611000-94615400	Weak transcription	HUVEC	blood vessel
6	chr10:94614400-94615000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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