Variant report

Variant	rs61862790
Chromosome Location	chr10:94504410-94504411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17107841	1.00[ASN][1000 genomes]
rs17374868	1.00[ASN][1000 genomes]
rs2488067	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41290178	1.00[AFR][1000 genomes]
rs61860813	1.00[AFR][1000 genomes]
rs61860815	1.00[AFR][1000 genomes]
rs61860816	1.00[AFR][1000 genomes]
rs61860817	1.00[AFR][1000 genomes]
rs61860818	1.00[AFR][1000 genomes]
rs61860821	1.00[AFR][1000 genomes]
rs61860830	1.00[AFR][1000 genomes]
rs61860835	1.00[AFR][1000 genomes]
rs61860858	1.00[AFR][1000 genomes]
rs61862260	1.00[AFR][1000 genomes]
rs61862271	1.00[AFR][1000 genomes]
rs61862280	1.00[AFR][1000 genomes]
rs61862285	1.00[AFR][1000 genomes]
rs61862316	1.00[AFR][1000 genomes]
rs61862319	1.00[AFR][1000 genomes]
rs61862320	1.00[AFR][1000 genomes]
rs61862321	1.00[AFR][1000 genomes]
rs61862322	1.00[AFR][1000 genomes]
rs61862325	1.00[AFR][1000 genomes]
rs61862326	1.00[AFR][1000 genomes]
rs61862330	1.00[AFR][1000 genomes]
rs61862331	1.00[AFR][1000 genomes]
rs61862789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862821	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61862823	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61862824	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61862829	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94499400-94505600	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:94501200-94506800	Weak transcription	Spleen	Spleen
3	chr10:94502000-94504600	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:94502200-94507400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:94502400-94504600	Enhancers	Primary B cells from cord blood	blood
6	chr10:94502600-94510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:94503000-94506800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:94503200-94507000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:94503400-94504600	Bivalent Enhancer	GM12878-XiMat	blood
10	chr10:94504200-94506400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:94504200-94507400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:94504200-94510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:94504400-94506800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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