Variant report

Variant	rs61860813
Chromosome Location	chr10:94609401-94609402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
2	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
3	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
4	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207496	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11814666	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815947	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817137	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490731	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4600123	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59504481	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860812	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	1.00[EUR][1000 genomes]
rs61860828	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61860832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862331	1.00[AFR][1000 genomes]
rs61862338	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862339	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862340	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862341	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862344	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs61862789	1.00[AFR][1000 genomes]
rs61862790	1.00[AFR][1000 genomes]
rs61862792	1.00[AFR][1000 genomes]
rs61862793	1.00[AFR][1000 genomes]
rs61862816	1.00[AFR][1000 genomes]
rs61862817	1.00[AFR][1000 genomes]
rs61862818	1.00[AFR][1000 genomes]
rs61862821	1.00[AFR][1000 genomes]
rs61862823	1.00[AFR][1000 genomes]
rs61862824	1.00[AFR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7092086	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974055	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
2	chr10:94607600-94609600	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr10:94607600-94609600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:94607600-94609600	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr10:94607600-94609600	Active TSS	Stomach Smooth Muscle	stomach
6	chr10:94607600-94609600	Active TSS	HepG2	liver
7	chr10:94607800-94609600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:94607800-94609600	Active TSS	Fetal Stomach	stomach
9	chr10:94607800-94609600	Active TSS	Right Ventricle	heart
10	chr10:94607800-94609800	Active TSS	Psoas Muscle	Psoas
11	chr10:94608000-94609600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:94608000-94609600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:94608000-94609600	Active TSS	Right Atrium	heart
14	chr10:94608000-94609800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:94608000-94609800	Active TSS	Fetal Brain Male	brain
16	chr10:94608000-94610200	Active TSS	K562	blood
17	chr10:94608600-94609600	Flanking Active TSS	HMEC	breast
18	chr10:94608800-94609600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr10:94608800-94609600	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr10:94608800-94609600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr10:94608800-94609600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr10:94608800-94609800	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr10:94608800-94609800	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr10:94608800-94610200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:94608800-94610200	Flanking Active TSS	HUVEC	blood vessel
26	chr10:94609000-94609600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr10:94609000-94609600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr10:94609000-94609600	Flanking Active TSS	Liver	Liver
29	chr10:94609000-94609600	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr10:94609000-94609600	Flanking Active TSS	Fetal Heart	heart
31	chr10:94609000-94609600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr10:94609000-94609600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr10:94609000-94609600	Flanking Active TSS	GM12878-XiMat	blood
34	chr10:94609000-94609800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr10:94609000-94609800	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr10:94609000-94609800	Flanking Active TSS	Fetal Lung	lung
37	chr10:94609000-94610000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:94609000-94610200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:94609200-94609600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:94609200-94609600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:94609200-94609600	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr10:94609200-94609600	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr10:94609200-94609600	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr10:94609200-94609600	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr10:94609200-94609600	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr10:94609200-94609600	Enhancers	Small Intestine	intestine
47	chr10:94609200-94609600	Flanking Active TSS	A549	lung
48	chr10:94609200-94609600	Flanking Active TSS	Hela-S3	cervix
49	chr10:94609200-94609600	Flanking Active TSS	NHLF	lung
50	chr10:94609200-94609800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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