Variant report

Variant	rs61862269
Chromosome Location	chr10:94661412-94661413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94657045..94660020-chr10:94660295..94662029,2	MCF-7	breast:
2	chr10:94654369..94656417-chr10:94660704..94662374,2	K562	blood:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11812999	0.92[AFR][1000 genomes]
rs11814666	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815696	1.00[AFR][1000 genomes]
rs11815947	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816069	1.00[AFR][1000 genomes]
rs11817137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818640	0.84[AFR][1000 genomes]
rs11818653	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818870	1.00[AFR][1000 genomes]
rs11818946	1.00[AFR][1000 genomes]
rs1222603	0.84[AFR][1000 genomes]
rs17093817	0.92[AFR][1000 genomes]
rs17108007	0.85[AFR][1000 genomes]
rs2050790	0.84[AFR][1000 genomes]
rs2486688	0.84[AFR][1000 genomes]
rs2486691	0.84[AFR][1000 genomes]
rs2486692	0.84[AFR][1000 genomes]
rs2490731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490734	0.80[AFR][1000 genomes]
rs2490735	0.80[AFR][1000 genomes]
rs2490737	0.80[AFR][1000 genomes]
rs2490738	0.80[AFR][1000 genomes]
rs35903569	0.84[AFR][1000 genomes]
rs41290178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	0.84[EUR][1000 genomes]
rs4244352	0.84[AFR][1000 genomes]
rs4485042	0.84[AFR][1000 genomes]
rs4600123	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57768338	1.00[AFR][1000 genomes]
rs59504481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60978227	0.84[AFR][1000 genomes]
rs61057049	1.00[AFR][1000 genomes]
rs61860812	0.92[EUR][1000 genomes]
rs61860813	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860828	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	0.92[EUR][1000 genomes]
rs61860832	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	0.84[EUR][1000 genomes]
rs61862338	0.84[EUR][1000 genomes]
rs61862339	0.84[EUR][1000 genomes]
rs61862340	0.84[EUR][1000 genomes]
rs61862341	0.84[EUR][1000 genomes]
rs61862344	0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7081634	1.00[AFR][1000 genomes]
rs7088919	0.84[AFR][1000 genomes]
rs7092086	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098092	0.84[AFR][1000 genomes]
rs7903878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7909248	1.00[AFR][1000 genomes]
rs7921198	0.92[AFR][1000 genomes]
rs835234	0.84[AFR][1000 genomes]
rs835235	0.84[AFR][1000 genomes]
rs835236	0.84[AFR][1000 genomes]
rs835237	0.84[AFR][1000 genomes]
rs835239	0.84[AFR][1000 genomes]
rs835242	0.84[AFR][1000 genomes]
rs835243	0.84[AFR][1000 genomes]
rs835244	0.84[AFR][1000 genomes]
rs835246	0.80[AFR][1000 genomes]
rs835248	0.84[AFR][1000 genomes]
rs835249	0.84[AFR][1000 genomes]
rs835252	0.84[AFR][1000 genomes]
rs835253	0.84[AFR][1000 genomes]
rs835254	0.84[AFR][1000 genomes]
rs835255	0.84[AFR][1000 genomes]
rs844340	0.84[AFR][1000 genomes]
rs856533	0.84[AFR][1000 genomes]
rs865612	0.84[AFR][1000 genomes]
rs9419756	0.84[AFR][1000 genomes]
rs9419757	0.84[AFR][1000 genomes]
rs9419759	0.84[AFR][1000 genomes]
rs9420601	0.84[AFR][1000 genomes]
rs9420602	0.84[AFR][1000 genomes]
rs974055	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv1847300	chr10:94660133-94670849	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
3	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
4	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
5	chr10:94652600-94663800	Weak transcription	Liver	Liver
6	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
7	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
8	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
9	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
12	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
13	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
14	chr10:94652600-94718000	Weak transcription	Ovary	ovary
15	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
16	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
18	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
20	chr10:94653200-94662200	Weak transcription	HepG2	liver
21	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
22	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
23	chr10:94654000-94662200	Strong transcription	HUVEC	blood vessel
24	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:94655200-94667000	Weak transcription	Fetal Intestine Large	intestine
29	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
31	chr10:94655400-94672800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:94655600-94667800	Weak transcription	Fetal Intestine Small	intestine
33	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
34	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
35	chr10:94656800-94674000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
37	chr10:94657400-94673800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:94657800-94667000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:94657800-94669600	Weak transcription	K562	blood
40	chr10:94657800-94674200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:94657800-94680200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:94658000-94663600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
47	chr10:94658200-94661600	Weak transcription	Primary T cells from cord blood	blood
48	chr10:94658200-94662000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr10:94658200-94663600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:94658200-94667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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