Variant report

Variant	rs7098092
Chromosome Location	chr10:94825144-94825145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr10:94825123-94829150	NT2-D1	testis:	n/a	n/a
2	CTCF	chr10:94825120-94825270	HepG2	liver:	n/a	chr10:94825261-94825270
3	SUZ12	chr10:94824892-94829163	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94820079..94822680-chr10:94824918..94827506,3	K562	blood:
2	chr10:94822689..94825636-chr10:94825703..94828168,2	K562	blood:
3	chr10:94815612..94818000-chr10:94823407..94825360,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226425	TF binding region
ENSG00000187553	Chromatin interaction
ENSG00000226425	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11812999	1.00[AMR][1000 genomes]
rs11815696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816069	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818946	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1222603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17093817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108007	1.00[AMR][1000 genomes]
rs2050790	1.00[AFR][1000 genomes]
rs2486688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490734	1.00[AMR][1000 genomes]
rs2490735	1.00[AMR][1000 genomes]
rs2490737	1.00[AMR][1000 genomes]
rs2490738	1.00[AMR][1000 genomes]
rs35903569	1.00[AMR][1000 genomes]
rs4244352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4485042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768338	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60978227	1.00[AMR][1000 genomes]
rs61057049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61862269	0.84[AFR][1000 genomes]
rs7081634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323058	1.00[AMR][1000 genomes]
rs7909248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7921198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856533	1.00[AFR][1000 genomes]
rs865612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94819800-94827800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:94822000-94826800	Weak transcription	Dnd41	blood
3	chr10:94822400-94826400	Weak transcription	HUVEC	blood vessel
4	chr10:94822400-94827200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:94822800-94825400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:94823000-94828200	Weak transcription	Pancreas	Pancrea
7	chr10:94823000-94828400	Weak transcription	Gastric	stomach
8	chr10:94823000-94829600	Weak transcription	K562	blood
9	chr10:94823600-94825400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:94824000-94825200	ZNF genes & repeats	Spleen	Spleen
11	chr10:94824000-94828200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:94824200-94825200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr10:94824600-94825200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
14	chr10:94824600-94825200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:94825000-94825200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr10:94825000-94825400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr10:94825000-94825400	Enhancers	HepG2	liver
18	chr10:94825000-94825600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:94825000-94825800	Bivalent Enhancer	Fetal Muscle Leg	muscle

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