Variant report

Variant	rs835251
Chromosome Location	chr10:94748916-94748917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94747646..94749264-chr10:94816828..94819755,2	K562	blood:
2	chr10:94742230..94747039-chr10:94747963..94752484,4	K562	blood:
3	chr10:94744689..94747532-chr10:94748768..94751037,3	K562	blood:
4	chr10:94740523..94743035-chr10:94748693..94750893,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11812999	1.00[AMR][1000 genomes]
rs11815696	1.00[AMR][1000 genomes]
rs11816069	1.00[AMR][1000 genomes]
rs11818640	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818870	1.00[AMR][1000 genomes]
rs11818946	1.00[AMR][1000 genomes]
rs1222603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17093817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108007	1.00[AMR][1000 genomes]
rs2050790	0.92[AFR][1000 genomes]
rs2486688	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486691	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486692	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490734	1.00[AMR][1000 genomes]
rs2490735	1.00[AMR][1000 genomes]
rs2490737	1.00[AMR][1000 genomes]
rs2490738	1.00[AMR][1000 genomes]
rs35903569	1.00[AMR][1000 genomes]
rs4244352	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4485042	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768338	1.00[AMR][1000 genomes]
rs60978227	1.00[AMR][1000 genomes]
rs61057049	1.00[AMR][1000 genomes]
rs7081634	1.00[AMR][1000 genomes]
rs7088919	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098092	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323058	1.00[AMR][1000 genomes]
rs7909248	1.00[AMR][1000 genomes]
rs7921198	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835234	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835237	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835242	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835243	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835246	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835249	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835252	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835253	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835254	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835255	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844340	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856533	0.92[AFR][1000 genomes]
rs865612	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419757	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419758	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420601	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
2	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
3	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
8	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:94736000-94753600	Weak transcription	Gastric	stomach
14	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
15	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel
16	chr10:94746400-94753000	Weak transcription	Primary T cells from cord blood	blood
17	chr10:94748000-94750400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:94748800-94749000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:94748800-94749000	Enhancers	Colon Smooth Muscle	Colon
20	chr10:94748800-94750400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:94748800-94750800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:94748800-94751800	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links