Variant report

Variant	rs835244
Chromosome Location	chr10:94757904-94757905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94605941..94608356-chr10:94757267..94759240,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11812999	1.00[AMR][1000 genomes]
rs11815696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816069	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818946	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1222603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17093817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108007	1.00[AMR][1000 genomes]
rs2050790	1.00[AFR][1000 genomes]
rs2486688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490734	1.00[AMR][1000 genomes]
rs2490735	1.00[AMR][1000 genomes]
rs2490737	1.00[AMR][1000 genomes]
rs2490738	1.00[AMR][1000 genomes]
rs35903569	1.00[AMR][1000 genomes]
rs4244352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4485042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768338	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60978227	1.00[AMR][1000 genomes]
rs61057049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61862269	0.84[AFR][1000 genomes]
rs7081634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323058	1.00[AMR][1000 genomes]
rs7909248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7921198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856533	1.00[AFR][1000 genomes]
rs865612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
6	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
8	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel
9	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:94750400-94758200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:94750800-94774000	Weak transcription	Adipose Nuclei	Adipose
13	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
14	chr10:94751800-94769200	Weak transcription	K562	blood
15	chr10:94754000-94758800	Weak transcription	Fetal Thymus	thymus
16	chr10:94754000-94760000	Weak transcription	Primary T cells from cord blood	blood
17	chr10:94754000-94772600	Weak transcription	Pancreas	Pancrea
18	chr10:94754400-94765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:94754400-94785000	Weak transcription	Dnd41	blood
20	chr10:94756200-94774000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr10:94756600-94758000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:94756600-94758000	Enhancers	Primary hematopoietic stem cells	blood
23	chr10:94756600-94758000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:94756600-94758000	Enhancers	NHDF-Ad	bronchial
25	chr10:94756800-94758000	Enhancers	Fetal Heart	heart
26	chr10:94756800-94758000	Enhancers	HSMMtube	muscle
27	chr10:94756800-94776200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:94757200-94761400	Weak transcription	Hela-S3	cervix
29	chr10:94757400-94784000	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:94757400-94784400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:94757600-94758800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:94757600-94759800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:94757800-94763400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr10:94757800-94773800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:94757800-94776000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:94757800-94777200	Weak transcription	HSMM	muscle
38	chr10:94757800-94784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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