Variant report

Variant	rs835235
Chromosome Location	chr10:94753545-94753546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:94753325-94754487	HEK293	kidney:	n/a	chr10:94754140-94754147
2	POLR2A	chr10:94753368-94754142	H1-neurons	neurons:	n/a	n/a
3	PBX3	chr10:94753466-94754079	SK-N-SH	brain:	n/a	n/a
4	EP300	chr10:94753224-94754082	SK-N-SH_RA	brain:	n/a	chr10:94753527-94753536
5	EP300	chr10:94753192-94754022	SK-N-SH_RA	brain:	n/a	chr10:94753527-94753536
6	POLR2A	chr10:94753387-94754118	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
EXOC6	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11812999	1.00[AMR][1000 genomes]
rs11815696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816069	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818946	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1222603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17093817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108007	1.00[AMR][1000 genomes]
rs2050790	1.00[AFR][1000 genomes]
rs2486688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490734	1.00[AMR][1000 genomes]
rs2490735	1.00[AMR][1000 genomes]
rs2490737	1.00[AMR][1000 genomes]
rs2490738	1.00[AMR][1000 genomes]
rs35903569	1.00[AMR][1000 genomes]
rs4244352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4485042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768338	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60978227	1.00[AMR][1000 genomes]
rs61057049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61862269	0.84[AFR][1000 genomes]
rs7081634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323058	1.00[AMR][1000 genomes]
rs7909248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7921198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856533	1.00[AFR][1000 genomes]
rs865612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
6	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:94736000-94753600	Weak transcription	Gastric	stomach
8	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
9	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel
10	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:94749600-94753600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:94750400-94758200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:94750800-94753600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:94750800-94753600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:94750800-94755200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:94750800-94756600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:94750800-94774000	Weak transcription	Adipose Nuclei	Adipose
19	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
20	chr10:94751800-94754400	Enhancers	Dnd41	blood
21	chr10:94751800-94769200	Weak transcription	K562	blood
22	chr10:94752200-94754200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:94752200-94756000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:94752800-94754400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:94752800-94754400	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:94752800-94755400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:94752800-94755600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:94752800-94756000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr10:94753000-94754000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr10:94753000-94754000	Enhancers	Primary T cells from cord blood	blood
31	chr10:94753000-94755200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr10:94753200-94753600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:94753200-94755000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr10:94753400-94753800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:94753400-94753800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr10:94753400-94754000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:94753400-94754000	Enhancers	Brain Germinal Matrix	brain
38	chr10:94753400-94754200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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