Variant report

Variant	rs835237
Chromosome Location	chr10:94754464-94754465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:94753325-94754487	HEK293	kidney:	n/a	chr10:94754140-94754147

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:94754429-94754479	HepG2	liver:	n/a
2	chr10:94754429-94754479	NH-A	brain:	n/a
3	chr10:94754429-94754479	GM06990	blood:	n/a
4	chr10:94754429-94754479	GM12878	blood:	n/a
5	chr10:94754429-94754479	HCT-116	colon:	n/a
6	chr10:94754429-94754479	Hepatocyte	liver:	n/a
7	chr10:94754429-94754479	NHDF-neo	bronchial:	n/a
8	chr10:94754429-94754479	HRCEpiC	kidney:	n/a
9	chr10:94754429-94754479	AG10803	skin:	n/a
10	chr10:94754429-94754479	BJ	skin:	n/a
11	chr10:94754429-94754479	RPTEC	kidney:	n/a
12	chr10:94754429-94754479	A549	lung:	n/a
13	chr10:94754429-94754479	AG09309	skin:	n/a
14	chr10:94754429-94754479	Hela-S3	cervix:	n/a
15	chr10:94754429-94754479	AoSMC	blood vessel:	n/a
16	chr10:94754429-94754479	CMK	blood:	n/a
17	chr10:94754429-94754479	SKMC	muscle:	n/a
18	chr10:94754429-94754479	HRE	kidney:	n/a
19	chr10:94754429-94754479	SAEC	small airway:	n/a
20	chr10:94754429-94754479	HEK293	kidney:	embryo
21	chr10:94754429-94754479	SK-N-SH	brain:	n/a
22	chr10:94754429-94754479	MCF-7	breast:	n/a
23	chr10:94754429-94754479	U87	brain:	n/a
24	chr10:94754429-94754479	PANC-1	pancreas:	n/a
25	chr10:94754429-94754479	HCPEpiC	choroid plexus:	n/a
26	chr10:94754429-94754479	T-47D	breast:	n/a
27	chr10:94754429-94754479	ProgFib	skin:	n/a
28	chr10:94754429-94754479	PFSK-1	brain:	n/a
29	chr10:94754429-94754479	HAEpiC	amniotic membrane:	n/a
30	chr10:94754429-94754479	Jurkat	blood:	n/a
31	chr10:94754429-94754479	HCM	heart:	n/a
32	chr10:94754429-94754479	HPAEpiC	pulmonary alveolar:	n/a
33	chr10:94754429-94754479	PrEC	prostate:	n/a
34	chr10:94754429-94754479	HIPEpiC	eye:	n/a
35	chr10:94754429-94754479	AG04449	skin:	fetal
36	chr10:94754429-94754479	HCF	heart:	n/a
37	chr10:94754429-94754479	MCF10A-Er-Src	breast:	n/a
38	chr10:94754429-94754479	NT2-D1	testis:	n/a
39	chr10:94754429-94754479	HL-60	blood:	n/a
40	chr10:94754429-94754479	NB4	blood:	n/a
41	chr10:94754429-94754479	GM19239	blood:	n/a
42	chr10:94754429-94754479	GM12892	blood:	n/a
43	chr10:94754429-94754479	HUVEC	blood vessel:	n/a
44	chr10:94754429-94754479	H1-hESC	embryonic stem cell:	embryo
45	chr10:94754429-94754479	NHBE	bronchial:	n/a
46	chr10:94754429-94754479	HNPCEpiC	eye:	n/a
47	chr10:94754429-94754479	BE2_C	brain:	n/a
48	chr10:94754429-94754479	IMR90	lung:	fetal
49	chr10:94754429-94754479	ECC-1	luminal epithelium:	n/a
50	chr10:94754429-94754479	SK-N-SH_RA	brain:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94753932..94755688-chr10:94783121..94786065,2	K562	blood:
2	chr10:94753894..94756742-chr10:94760841..94763002,4	K562	blood:

No data

Variant related genes	Relation type
EXOC6	TF binding region
EXOC6	CpG island

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11812999	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11814666	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs11814743	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs11815696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816069	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11817137	1.00[YRI][hapmap]
rs11818622	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs11818640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818946	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1222603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17093817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108007	1.00[AMR][1000 genomes]
rs2050790	1.00[AFR][1000 genomes]
rs2486688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2486692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490734	1.00[AMR][1000 genomes]
rs2490735	1.00[AMR][1000 genomes]
rs2490737	1.00[AMR][1000 genomes]
rs2490738	1.00[AMR][1000 genomes]
rs35903569	1.00[AMR][1000 genomes]
rs4244352	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4485042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768338	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60978227	1.00[AMR][1000 genomes]
rs61057049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61862269	0.84[AFR][1000 genomes]
rs6583846	1.00[JPT][hapmap]
rs7070025	1.00[YRI][hapmap]
rs7081634	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7098092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323058	1.00[AMR][1000 genomes]
rs7909248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913340	1.00[YRI][hapmap]
rs7921198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835236	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835239	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835242	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835243	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835246	1.00[ASW][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835254	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs835255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856533	1.00[AFR][1000 genomes]
rs865612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9419759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9420602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
6	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
8	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel
9	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:94750400-94758200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:94750800-94755200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:94750800-94756600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:94750800-94774000	Weak transcription	Adipose Nuclei	Adipose
15	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
16	chr10:94751800-94769200	Weak transcription	K562	blood
17	chr10:94752200-94756000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:94752800-94755400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:94752800-94755600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:94752800-94756000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:94753000-94755200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:94753200-94755000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr10:94753600-94755800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr10:94753800-94757800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:94754000-94755000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:94754000-94755000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:94754000-94758800	Weak transcription	Fetal Thymus	thymus
28	chr10:94754000-94760000	Weak transcription	Primary T cells from cord blood	blood
29	chr10:94754000-94772600	Weak transcription	Pancreas	Pancrea
30	chr10:94754200-94756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:94754400-94754800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:94754400-94754800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:94754400-94754800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:94754400-94756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:94754400-94756600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:94754400-94765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:94754400-94785000	Weak transcription	Dnd41	blood

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