Variant report

Variant	rs61862263
Chromosome Location	chr10:94655221-94655222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94653732..94656423-chr10:94657725..94660166,2	K562	blood:
2	chr10:94653707..94655226-chr10:94655974..94658255,2	MCF-7	breast:
3	chr10:94654369..94656417-chr10:94660704..94662374,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11814666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	0.84[EUR][1000 genomes]
rs4600123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59504481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860812	0.92[EUR][1000 genomes]
rs61860813	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	0.92[EUR][1000 genomes]
rs61860832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	0.84[EUR][1000 genomes]
rs61862338	0.84[EUR][1000 genomes]
rs61862339	0.84[EUR][1000 genomes]
rs61862340	0.84[EUR][1000 genomes]
rs61862341	0.84[EUR][1000 genomes]
rs61862344	0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7092086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
4	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:94650600-94656200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:94650800-94655600	Enhancers	Fetal Intestine Small	intestine
8	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:94651800-94655400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:94651800-94655400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:94652000-94655400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:94652000-94655400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:94652000-94655400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:94652400-94656400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:94652400-94656800	Weak transcription	Adipose Nuclei	Adipose
17	chr10:94652400-94657000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:94652400-94657200	Weak transcription	Aorta	Aorta
19	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
20	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
23	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
24	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
25	chr10:94652600-94656200	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:94652600-94656400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:94652600-94656400	Weak transcription	K562	blood
28	chr10:94652600-94656800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:94652600-94656800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:94652600-94657000	Weak transcription	Lung	lung
31	chr10:94652600-94657200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr10:94652600-94657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:94652600-94663800	Weak transcription	Liver	Liver
34	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
35	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
36	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
37	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
40	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
41	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
42	chr10:94652600-94718000	Weak transcription	Ovary	ovary
43	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
44	chr10:94652800-94656400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:94652800-94656600	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:94652800-94657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
49	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:94653000-94656800	Weak transcription	Dnd41	blood

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