Variant report

Variant	rs61862260
Chromosome Location	chr10:94644246-94644247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94643437..94646429-chr10:94647651..94649627,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11187214	1.00[EUR][1000 genomes]
rs11814666	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814743	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815289	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815947	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817137	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818299	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11818622	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818653	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2490731	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41290182	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4600123	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57118208	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142156	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59504481	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60862172	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860812	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860820	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860823	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860824	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860825	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860826	1.00[EUR][1000 genomes]
rs61860828	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860830	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61860832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860836	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860837	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860839	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860840	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61860859	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862262	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862263	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862264	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862266	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862267	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862268	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862269	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862272	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862274	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862283	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862284	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862289	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862317	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862318	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862330	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862331	1.00[AFR][1000 genomes]
rs61862338	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862339	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862340	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862341	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862344	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61862345	0.84[EUR][1000 genomes]
rs61862346	0.84[EUR][1000 genomes]
rs61862789	1.00[AFR][1000 genomes]
rs61862790	1.00[AFR][1000 genomes]
rs61862792	1.00[AFR][1000 genomes]
rs61862793	1.00[AFR][1000 genomes]
rs61862816	1.00[AFR][1000 genomes]
rs61862817	1.00[AFR][1000 genomes]
rs61862818	1.00[AFR][1000 genomes]
rs61862821	1.00[AFR][1000 genomes]
rs61862823	1.00[AFR][1000 genomes]
rs61862824	1.00[AFR][1000 genomes]
rs7081182	0.92[EUR][1000 genomes]
rs7092086	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903878	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904089	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974055	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
5	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
7	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
8	chr10:94640200-94646000	Weak transcription	HUVEC	blood vessel
9	chr10:94640200-94647600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:94641200-94646200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:94641800-94646200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:94644000-94644400	Enhancers	Fetal Heart	heart
19	chr10:94644200-94646000	Enhancers	A549	lung

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