Variant report

Variant	rs61862331
Chromosome Location	chr10:94730274-94730275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94723115..94725213-chr10:94730158..94733816,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs41290178	1.00[AFR][1000 genomes]
rs41290182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61860813	1.00[AFR][1000 genomes]
rs61860815	1.00[AFR][1000 genomes]
rs61860816	1.00[AFR][1000 genomes]
rs61860817	1.00[AFR][1000 genomes]
rs61860818	1.00[AFR][1000 genomes]
rs61860821	1.00[AFR][1000 genomes]
rs61860830	1.00[AFR][1000 genomes]
rs61860835	1.00[AFR][1000 genomes]
rs61860858	1.00[AFR][1000 genomes]
rs61862260	1.00[AFR][1000 genomes]
rs61862271	1.00[AFR][1000 genomes]
rs61862280	1.00[AFR][1000 genomes]
rs61862285	1.00[AFR][1000 genomes]
rs61862316	1.00[AFR][1000 genomes]
rs61862319	1.00[AFR][1000 genomes]
rs61862320	1.00[AFR][1000 genomes]
rs61862321	1.00[AFR][1000 genomes]
rs61862322	1.00[AFR][1000 genomes]
rs61862325	1.00[AFR][1000 genomes]
rs61862326	1.00[AFR][1000 genomes]
rs61862330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862345	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862346	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862789	1.00[AFR][1000 genomes]
rs61862790	1.00[AFR][1000 genomes]
rs61862792	1.00[AFR][1000 genomes]
rs61862793	1.00[AFR][1000 genomes]
rs61862816	1.00[AFR][1000 genomes]
rs61862817	1.00[AFR][1000 genomes]
rs61862818	1.00[AFR][1000 genomes]
rs61862821	1.00[AFR][1000 genomes]
rs61862823	1.00[AFR][1000 genomes]
rs61862824	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
4	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
6	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
7	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
8	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
10	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
16	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
17	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
18	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:94713400-94730800	Weak transcription	Adipose Nuclei	Adipose
20	chr10:94713400-94731000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:94713400-94732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:94714000-94731600	Weak transcription	Thymus	Thymus
24	chr10:94714200-94732200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:94714800-94732000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:94714800-94733200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr10:94715000-94730400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:94715000-94732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:94715600-94734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:94716800-94731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr10:94718400-94733800	Weak transcription	Liver	Liver
32	chr10:94719800-94731600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:94720200-94731200	Weak transcription	Primary T cells from cord blood	blood
34	chr10:94720200-94732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:94720200-94739200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:94722000-94732400	Weak transcription	Fetal Heart	heart
37	chr10:94722800-94733400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:94725400-94730400	Weak transcription	HMEC	breast
39	chr10:94725600-94731800	Weak transcription	A549	lung
40	chr10:94725600-94734600	Weak transcription	Fetal Lung	lung
41	chr10:94725800-94730400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:94725800-94730400	Weak transcription	NH-A	brain
43	chr10:94727400-94730800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:94728600-94731800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:94728600-94733000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:94728800-94730600	Strong transcription	Fetal Muscle Leg	muscle
47	chr10:94728800-94730800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:94728800-94730800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr10:94728800-94730800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:94728800-94730800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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