Variant report

Variant	rs61862345
Chromosome Location	chr10:94749516-94749517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94742230..94747039-chr10:94747963..94752484,4	K562	blood:
2	chr10:94744689..94747532-chr10:94748768..94751037,3	K562	blood:
3	chr10:94740523..94743035-chr10:94748693..94750893,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11187214	0.84[EUR][1000 genomes]
rs11814666	0.84[EUR][1000 genomes]
rs11814743	0.84[EUR][1000 genomes]
rs11815289	0.84[EUR][1000 genomes]
rs11815947	0.84[EUR][1000 genomes]
rs11817137	0.84[EUR][1000 genomes]
rs11818622	0.84[EUR][1000 genomes]
rs11818653	0.84[EUR][1000 genomes]
rs2490731	0.84[EUR][1000 genomes]
rs41290178	0.84[EUR][1000 genomes]
rs41290182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4600123	0.84[EUR][1000 genomes]
rs57118208	0.84[EUR][1000 genomes]
rs57142156	0.84[EUR][1000 genomes]
rs59504481	0.84[EUR][1000 genomes]
rs60862172	0.84[EUR][1000 genomes]
rs61860813	0.84[EUR][1000 genomes]
rs61860816	0.84[EUR][1000 genomes]
rs61860817	0.84[EUR][1000 genomes]
rs61860818	0.84[EUR][1000 genomes]
rs61860819	0.84[EUR][1000 genomes]
rs61860820	0.84[EUR][1000 genomes]
rs61860821	0.84[EUR][1000 genomes]
rs61860822	0.84[EUR][1000 genomes]
rs61860823	0.84[EUR][1000 genomes]
rs61860824	0.84[EUR][1000 genomes]
rs61860826	0.84[EUR][1000 genomes]
rs61860828	0.84[EUR][1000 genomes]
rs61860832	0.84[EUR][1000 genomes]
rs61860835	0.84[EUR][1000 genomes]
rs61860836	0.84[EUR][1000 genomes]
rs61860837	0.84[EUR][1000 genomes]
rs61860839	0.84[EUR][1000 genomes]
rs61860840	0.84[EUR][1000 genomes]
rs61860858	0.84[EUR][1000 genomes]
rs61860859	0.84[EUR][1000 genomes]
rs61862260	0.84[EUR][1000 genomes]
rs61862262	0.84[EUR][1000 genomes]
rs61862263	0.84[EUR][1000 genomes]
rs61862264	0.84[EUR][1000 genomes]
rs61862266	0.84[EUR][1000 genomes]
rs61862267	0.84[EUR][1000 genomes]
rs61862268	0.84[EUR][1000 genomes]
rs61862269	0.84[EUR][1000 genomes]
rs61862271	0.84[EUR][1000 genomes]
rs61862272	0.84[EUR][1000 genomes]
rs61862274	0.84[EUR][1000 genomes]
rs61862280	0.84[EUR][1000 genomes]
rs61862282	0.84[EUR][1000 genomes]
rs61862283	0.84[EUR][1000 genomes]
rs61862284	0.84[EUR][1000 genomes]
rs61862285	0.84[EUR][1000 genomes]
rs61862287	0.84[EUR][1000 genomes]
rs61862289	0.84[EUR][1000 genomes]
rs61862290	0.84[EUR][1000 genomes]
rs61862291	0.84[EUR][1000 genomes]
rs61862316	0.84[EUR][1000 genomes]
rs61862317	0.84[EUR][1000 genomes]
rs61862318	0.84[EUR][1000 genomes]
rs61862319	0.84[EUR][1000 genomes]
rs61862320	0.84[EUR][1000 genomes]
rs61862321	0.84[EUR][1000 genomes]
rs61862322	0.84[EUR][1000 genomes]
rs61862325	0.84[EUR][1000 genomes]
rs61862326	0.84[EUR][1000 genomes]
rs61862327	0.84[EUR][1000 genomes]
rs61862330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862331	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61862338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61862346	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7092086	0.84[EUR][1000 genomes]
rs7903878	0.84[EUR][1000 genomes]
rs7904089	0.84[EUR][1000 genomes]
rs974055	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
2	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
3	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
8	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:94736000-94753600	Weak transcription	Gastric	stomach
13	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
14	chr10:94741400-94760800	Weak transcription	HUVEC	blood vessel
15	chr10:94746400-94753000	Weak transcription	Primary T cells from cord blood	blood
16	chr10:94748000-94750400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:94748800-94750400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:94748800-94750800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:94748800-94751800	Enhancers	K562	blood
20	chr10:94749000-94749800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:94749200-94749600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr10:94749200-94750400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:94749400-94749600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:94749400-94749800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:94749400-94750400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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