Variant report

Variant	rs61860812
Chromosome Location	chr10:94608925-94608926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
3	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
4	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
5	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
6	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152804	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000138160	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000207496	Chromatin interaction
ENSG00000225118	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11187214	0.92[EUR][1000 genomes]
rs11814666	0.92[EUR][1000 genomes]
rs11814743	0.92[EUR][1000 genomes]
rs11815289	0.92[EUR][1000 genomes]
rs11815947	0.92[EUR][1000 genomes]
rs11817137	0.92[EUR][1000 genomes]
rs11818622	0.92[EUR][1000 genomes]
rs11818653	0.92[EUR][1000 genomes]
rs2490731	0.92[EUR][1000 genomes]
rs41290178	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4600123	0.92[EUR][1000 genomes]
rs57118208	0.92[EUR][1000 genomes]
rs57142156	0.92[EUR][1000 genomes]
rs59504481	0.92[EUR][1000 genomes]
rs60862172	0.92[EUR][1000 genomes]
rs61860813	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860815	0.87[AMR][1000 genomes]
rs61860816	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860817	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860818	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860819	0.92[EUR][1000 genomes]
rs61860820	0.92[EUR][1000 genomes]
rs61860821	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860822	0.92[EUR][1000 genomes]
rs61860823	0.92[EUR][1000 genomes]
rs61860824	0.92[EUR][1000 genomes]
rs61860825	0.85[EUR][1000 genomes]
rs61860826	0.92[EUR][1000 genomes]
rs61860828	0.92[EUR][1000 genomes]
rs61860830	0.85[EUR][1000 genomes]
rs61860832	0.92[EUR][1000 genomes]
rs61860835	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860836	0.92[EUR][1000 genomes]
rs61860837	0.92[EUR][1000 genomes]
rs61860839	0.92[EUR][1000 genomes]
rs61860840	0.92[EUR][1000 genomes]
rs61860858	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61860859	0.92[EUR][1000 genomes]
rs61862260	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862262	0.92[EUR][1000 genomes]
rs61862263	0.92[EUR][1000 genomes]
rs61862264	0.92[EUR][1000 genomes]
rs61862266	0.92[EUR][1000 genomes]
rs61862267	0.92[EUR][1000 genomes]
rs61862268	0.92[EUR][1000 genomes]
rs61862269	0.92[EUR][1000 genomes]
rs61862271	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862272	0.92[EUR][1000 genomes]
rs61862274	0.92[EUR][1000 genomes]
rs61862280	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862282	0.92[EUR][1000 genomes]
rs61862283	0.92[EUR][1000 genomes]
rs61862284	0.92[EUR][1000 genomes]
rs61862285	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862287	0.92[EUR][1000 genomes]
rs61862289	0.92[EUR][1000 genomes]
rs61862290	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862291	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862316	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862317	0.92[EUR][1000 genomes]
rs61862318	0.92[EUR][1000 genomes]
rs61862319	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862320	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862321	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862322	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862325	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862326	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61862327	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7081182	0.85[EUR][1000 genomes]
rs7092086	0.92[EUR][1000 genomes]
rs7903878	0.92[EUR][1000 genomes]
rs7904089	0.92[EUR][1000 genomes]
rs974055	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
2	chr10:94607400-94609400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:94607600-94609000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:94607600-94609000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr10:94607600-94609000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:94607600-94609000	Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr10:94607600-94609000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:94607600-94609000	Active TSS	Brain Hippocampus Middle	brain
9	chr10:94607600-94609000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr10:94607600-94609200	Active TSS	Brain Anterior Caudate	brain
11	chr10:94607600-94609200	Active TSS	Brain Germinal Matrix	brain
12	chr10:94607600-94609200	Active TSS	Brain Substantia Nigra	brain
13	chr10:94607600-94609200	Active TSS	Rectal Smooth Muscle	rectum
14	chr10:94607600-94609400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:94607600-94609400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr10:94607600-94609400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr10:94607600-94609400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:94607600-94609400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:94607600-94609400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:94607600-94609400	Active TSS	Brain Cingulate Gyrus	brain
21	chr10:94607600-94609400	Active TSS	Colon Smooth Muscle	Colon
22	chr10:94607600-94609600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr10:94607600-94609600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:94607600-94609600	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr10:94607600-94609600	Active TSS	Stomach Smooth Muscle	stomach
26	chr10:94607600-94609600	Active TSS	HepG2	liver
27	chr10:94607800-94609000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:94607800-94609000	Active TSS	H9 Cell Line	embryonic stem cell
29	chr10:94607800-94609000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:94607800-94609000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:94607800-94609000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:94607800-94609000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:94607800-94609200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:94607800-94609200	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr10:94607800-94609200	Active TSS	Aorta	Aorta
36	chr10:94607800-94609200	Active TSS	Colonic Mucosa	Colon
37	chr10:94607800-94609200	Active TSS	Esophagus	oesophagus
38	chr10:94607800-94609200	Active TSS	Fetal Brain Female	brain
39	chr10:94607800-94609200	Active TSS	Gastric	stomach
40	chr10:94607800-94609200	Active TSS	Left Ventricle	heart
41	chr10:94607800-94609200	Active TSS	Lung	lung
42	chr10:94607800-94609200	Active TSS	Ovary	ovary
43	chr10:94607800-94609200	Active TSS	Pancreas	Pancrea
44	chr10:94607800-94609200	Active TSS	Small Intestine	intestine
45	chr10:94607800-94609200	Active TSS	A549	lung
46	chr10:94607800-94609200	Active TSS	NHLF	lung
47	chr10:94607800-94609400	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr10:94607800-94609400	Active TSS	NHDF-Ad	bronchial
49	chr10:94607800-94609600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:94607800-94609600	Active TSS	Fetal Stomach	stomach

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