Variant report

Variant	rs2490732
Chromosome Location	chr10:94609104-94609105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
3	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
4	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
5	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
6	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207496	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1033976	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736071	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736072	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10748586	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786057	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1326329	0.81[EUR][1000 genomes]
rs1326331	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326332	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536329	0.80[EUR][1000 genomes]
rs1960367	0.81[AMR][1000 genomes]
rs2025730	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094232	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148361	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182451	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246370	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490733	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933241	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933749	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583846	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583848	0.82[EUR][1000 genomes]
rs7069070	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078376	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082382	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089179	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477130	0.81[EUR][1000 genomes]
rs7893270	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894145	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897839	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7909191	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909581	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913340	1.00[ASN][1000 genomes]
rs7914859	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835250	0.81[EUR][1000 genomes]
rs860668	0.81[EUR][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973733	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980204	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
2	chr10:94607400-94609400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:94607600-94609200	Active TSS	Brain Anterior Caudate	brain
4	chr10:94607600-94609200	Active TSS	Brain Germinal Matrix	brain
5	chr10:94607600-94609200	Active TSS	Brain Substantia Nigra	brain
6	chr10:94607600-94609200	Active TSS	Rectal Smooth Muscle	rectum
7	chr10:94607600-94609400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:94607600-94609400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr10:94607600-94609400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr10:94607600-94609400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:94607600-94609400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:94607600-94609400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:94607600-94609400	Active TSS	Brain Cingulate Gyrus	brain
14	chr10:94607600-94609400	Active TSS	Colon Smooth Muscle	Colon
15	chr10:94607600-94609600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr10:94607600-94609600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:94607600-94609600	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr10:94607600-94609600	Active TSS	Stomach Smooth Muscle	stomach
19	chr10:94607600-94609600	Active TSS	HepG2	liver
20	chr10:94607800-94609200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:94607800-94609200	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr10:94607800-94609200	Active TSS	Aorta	Aorta
23	chr10:94607800-94609200	Active TSS	Colonic Mucosa	Colon
24	chr10:94607800-94609200	Active TSS	Esophagus	oesophagus
25	chr10:94607800-94609200	Active TSS	Fetal Brain Female	brain
26	chr10:94607800-94609200	Active TSS	Gastric	stomach
27	chr10:94607800-94609200	Active TSS	Left Ventricle	heart
28	chr10:94607800-94609200	Active TSS	Lung	lung
29	chr10:94607800-94609200	Active TSS	Ovary	ovary
30	chr10:94607800-94609200	Active TSS	Pancreas	Pancrea
31	chr10:94607800-94609200	Active TSS	Small Intestine	intestine
32	chr10:94607800-94609200	Active TSS	A549	lung
33	chr10:94607800-94609200	Active TSS	NHLF	lung
34	chr10:94607800-94609400	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr10:94607800-94609400	Active TSS	NHDF-Ad	bronchial
36	chr10:94607800-94609600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:94607800-94609600	Active TSS	Fetal Stomach	stomach
38	chr10:94607800-94609600	Active TSS	Right Ventricle	heart
39	chr10:94607800-94609800	Active TSS	Psoas Muscle	Psoas
40	chr10:94608000-94609200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:94608000-94609200	Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr10:94608000-94609200	Active TSS	Brain Angular Gyrus	brain
43	chr10:94608000-94609200	Active TSS	Fetal Muscle Trunk	muscle
44	chr10:94608000-94609200	Active TSS	Dnd41	blood
45	chr10:94608000-94609200	Active TSS	Hela-S3	cervix
46	chr10:94608000-94609200	Active TSS	HSMM	muscle
47	chr10:94608000-94609200	Active TSS	HSMMtube	muscle
48	chr10:94608000-94609400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:94608000-94609400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
50	chr10:94608000-94609400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links