Variant report

Variant	rs1960367
Chromosome Location	chr10:94643646-94643647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1033976	0.88[AMR][1000 genomes]
rs10786057	0.85[AMR][1000 genomes]
rs1326332	0.88[AMR][1000 genomes]
rs1409387	0.88[AMR][1000 genomes]
rs2246370	0.81[AMR][1000 genomes]
rs2246382	0.81[AMR][1000 genomes]
rs2246701	0.81[AMR][1000 genomes]
rs2250393	0.81[AMR][1000 genomes]
rs2490732	0.81[AMR][1000 genomes]
rs2490733	0.81[AMR][1000 genomes]
rs2497339	0.81[AMR][1000 genomes]
rs4933241	0.81[AMR][1000 genomes]
rs6583846	0.81[AMR][1000 genomes]
rs7914859	0.81[AMR][1000 genomes]
rs973733	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
5	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
7	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
8	chr10:94640200-94646000	Weak transcription	HUVEC	blood vessel
9	chr10:94640200-94647600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:94640600-94644200	Weak transcription	A549	lung
11	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:94641200-94646200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:94641800-94646200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:94643000-94644000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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