Variant report

Variant	rs2246382
Chromosome Location	chr10:94599609-94599610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94456016..94458040-chr10:94597968..94600497,2	K562	blood:
2	chr10:94594344..94597237-chr10:94597831..94600212,2	MCF-7	breast:
3	chr10:94450797..94452368-chr10:94598922..94601266,2	K562	blood:

Variant related genes	Relation type
ENSG00000152804	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1033976	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736071	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736072	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10748586	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786057	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1326329	0.80[EUR][1000 genomes]
rs1326331	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326332	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960367	0.81[AMR][1000 genomes]
rs2025730	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094232	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148361	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182451	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933241	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933749	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583846	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583848	0.81[EUR][1000 genomes]
rs7069070	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078376	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082382	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089179	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477130	0.80[EUR][1000 genomes]
rs7893270	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894145	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897839	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7909191	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909581	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913340	1.00[ASN][1000 genomes]
rs7914859	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835250	0.81[EUR][1000 genomes]
rs860668	0.80[EUR][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973733	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980204	0.80[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:94596800-94602400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:94596800-94604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
7	chr10:94597000-94599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:94597200-94599800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:94597400-94602600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:94598200-94602800	Weak transcription	Dnd41	blood
11	chr10:94598600-94607200	Weak transcription	Primary T cells from cord blood	blood
12	chr10:94598800-94599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:94599200-94600000	Enhancers	A549	lung
14	chr10:94599200-94603000	Weak transcription	Placenta	Placenta
15	chr10:94599400-94602200	Weak transcription	Adipose Nuclei	Adipose
16	chr10:94599400-94607200	Weak transcription	Osteobl	bone
17	chr10:94599400-94607400	Weak transcription	Spleen	Spleen
18	chr10:94599600-94599800	Genic enhancers	HUVEC	blood vessel
19	chr10:94599600-94599800	Enhancers	K562	blood
20	chr10:94599600-94600400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:94599600-94602200	Weak transcription	Psoas Muscle	Psoas
22	chr10:94599600-94602200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:94599600-94602200	Weak transcription	HepG2	liver
24	chr10:94599600-94602400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:94599600-94602600	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:94599600-94602600	Weak transcription	Hela-S3	cervix
27	chr10:94599600-94603000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:94599600-94604200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:94599600-94606600	Weak transcription	Lung	lung
30	chr10:94599600-94607600	Weak transcription	Fetal Muscle Trunk	muscle

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