Variant report

Variant	rs973733
Chromosome Location	chr10:94633764-94633765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1033976	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736071	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736072	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10748586	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786057	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.86[EUR][1000 genomes]
rs1326329	0.82[EUR][1000 genomes]
rs1326331	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326332	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536329	0.81[EUR][1000 genomes]
rs1960367	0.88[AMR][1000 genomes]
rs2025730	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094232	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148361	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182451	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246370	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933241	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933242	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933749	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583846	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583848	0.83[EUR][1000 genomes]
rs7069070	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070025	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078376	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082382	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089179	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477130	0.82[EUR][1000 genomes]
rs7893270	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894145	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897839	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7909191	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909581	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913340	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914859	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835250	0.82[EUR][1000 genomes]
rs860668	0.82[EUR][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980204	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:94627200-94636000	Weak transcription	K562	blood
4	chr10:94632200-94634400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:94632400-94636200	Weak transcription	Dnd41	blood
6	chr10:94633000-94636000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:94633000-94636000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:94633200-94636000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:94633200-94636000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:94633200-94636200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:94633200-94636200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:94633200-94636200	Weak transcription	A549	lung
13	chr10:94633200-94636400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:94633200-94640000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:94633200-94640200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:94633400-94636000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:94633400-94636000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:94633400-94636000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:94633400-94636200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:94633400-94636400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr10:94633400-94636600	Enhancers	HUVEC	blood vessel
22	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
23	chr10:94633600-94636000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:94633600-94636000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:94633600-94636000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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