Variant report

Variant	rs7069070
Chromosome Location	chr10:94582855-94582856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94576177..94578634-chr10:94580868..94583039,2	K562	blood:
2	chr10:94571094..94575993-chr10:94578849..94584538,5	K562	blood:
3	chr10:94536151..94539223-chr10:94580087..94583002,3	K562	blood:
4	chr10:94351782..94353596-chr10:94580543..94583283,2	K562	blood:
5	chr10:94582543..94583333-chr10:94639532..94640277,3	MCF-7	breast:
6	chr10:94452898..94455134-chr10:94580607..94583172,2	K562	blood:
7	chr10:94579684..94583610-chr10:94606698..94609963,4	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1033976	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466167	1.00[ASN][1000 genomes]
rs10736071	1.00[ASN][1000 genomes]
rs10748586	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs10786057	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187183	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1326331	1.00[ASN][1000 genomes]
rs1326332	0.95[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409387	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025730	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs2094232	1.00[ASN][1000 genomes]
rs2148361	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs2182451	0.95[CEU][hapmap];1.00[ASN][1000 genomes]
rs2246370	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246382	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246701	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250393	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422070	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422072	0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488062	1.00[ASN][1000 genomes]
rs2490732	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490733	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490740	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490742	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490744	1.00[ASN][1000 genomes]
rs2497322	1.00[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497323	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497324	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497326	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497327	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497331	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497339	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497348	1.00[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497350	1.00[ASN][1000 genomes]
rs4517429	1.00[ASN][1000 genomes]
rs4933241	1.00[ASN][1000 genomes]
rs4933242	0.96[CEU][hapmap];1.00[ASN][1000 genomes]
rs4933749	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933752	1.00[ASN][1000 genomes]
rs6583846	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7070025	0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];1.00[ASN][1000 genomes]
rs7078376	1.00[ASN][1000 genomes]
rs7082382	1.00[ASN][1000 genomes]
rs7089179	1.00[ASN][1000 genomes]
rs7893270	1.00[ASN][1000 genomes]
rs7894145	0.96[CEU][hapmap];1.00[ASN][1000 genomes]
rs7909191	1.00[ASN][1000 genomes]
rs7909581	1.00[ASN][1000 genomes]
rs7913340	0.84[CEU][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs7914859	1.00[ASN][1000 genomes]
rs9419746	1.00[ASN][1000 genomes]
rs9633695	1.00[ASN][1000 genomes]
rs973733	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7069070	CEP55	cis	cerebellum	SCAN
rs7069070	NOC3L	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94581200-94583000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:94581200-94583000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:94581200-94583400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:94581400-94583000	Enhancers	NHEK	skin
5	chr10:94581600-94592800	Weak transcription	Lung	lung
6	chr10:94582000-94583000	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:94582000-94583000	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:94582200-94583000	Flanking Active TSS	HUVEC	blood vessel
9	chr10:94582400-94583000	Enhancers	K562	blood
10	chr10:94582400-94583000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:94582400-94583000	Enhancers	Osteobl	bone
12	chr10:94582400-94583200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:94582400-94583200	Enhancers	Hela-S3	cervix
14	chr10:94582400-94585200	Weak transcription	A549	lung
15	chr10:94582400-94586200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:94582600-94585400	Weak transcription	Right Atrium	heart
17	chr10:94582600-94585400	Weak transcription	HepG2	liver
18	chr10:94582600-94590400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:94582800-94583200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:94582800-94585200	Weak transcription	Stomach Mucosa	stomach
21	chr10:94582800-94586000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:94582800-94586000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:94582800-94586600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:94582800-94586600	Weak transcription	Left Ventricle	heart
25	chr10:94582800-94589000	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:94582800-94589200	Weak transcription	Spleen	Spleen
27	chr10:94582800-94592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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