Variant report

Variant	rs835267
Chromosome Location	chr10:94790035-94790036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94783453..94786441-chr10:94789329..94791251,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10882139	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1097215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12771031	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1326329	0.91[ASN][1000 genomes]
rs1536329	0.91[ASN][1000 genomes]
rs1538648	0.86[ASN][1000 genomes]
rs2478232	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2486689	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2486690	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4919038	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61863078	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68040629	0.86[ASN][1000 genomes]
rs7477130	0.81[ASN][1000 genomes]
rs835250	0.91[ASN][1000 genomes]
rs835259	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs860668	0.91[ASN][1000 genomes]
rs980204	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
4	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
5	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:94773400-94800000	Weak transcription	Lung	lung
7	chr10:94775200-94791400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
11	chr10:94783200-94793400	Weak transcription	Fetal Heart	heart
12	chr10:94783200-94794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:94783400-94791800	Weak transcription	Liver	Liver
14	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
16	chr10:94786200-94793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:94786200-94799200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:94786400-94792000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:94786400-94809200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:94787000-94792400	Weak transcription	Fetal Intestine Large	intestine
21	chr10:94787200-94817600	Weak transcription	Dnd41	blood
22	chr10:94787400-94799400	Weak transcription	Primary T cells from cord blood	blood
23	chr10:94787600-94799400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:94787800-94791000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:94787800-94792600	Weak transcription	Brain Germinal Matrix	brain
26	chr10:94787800-94793000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:94787800-94799200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:94787800-94802000	Weak transcription	Primary B cells from cord blood	blood
29	chr10:94787800-94814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:94788000-94792600	Weak transcription	Fetal Intestine Small	intestine
31	chr10:94788000-94793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:94788000-94799400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
35	chr10:94788200-94791000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:94788200-94792000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:94788200-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:94788400-94791200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:94788400-94803400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:94788400-94811000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:94788400-94815800	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:94788600-94790600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:94788600-94791000	Enhancers	A549	lung
44	chr10:94788600-94791200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:94788600-94791200	Enhancers	Hela-S3	cervix
46	chr10:94788600-94792600	Enhancers	HSMM	muscle
47	chr10:94788800-94791200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr10:94788800-94791200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:94788800-94791200	Enhancers	Osteobl	bone
50	chr10:94788800-94791400	Enhancers	NHDF-Ad	bronchial

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