Variant report

Variant	rs10882319
Chromosome Location	chr10:95470241-95470242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10444062	0.93[ASN][1000 genomes]
rs11187596	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11187599	0.93[ASN][1000 genomes]
rs11187616	0.81[ASN][1000 genomes]
rs11187620	0.93[ASN][1000 genomes]
rs11187644	0.92[ASN][1000 genomes]
rs1998840	0.93[ASN][1000 genomes]
rs7094280	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv522686	chr10:95440286-95471338	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1054321	chr10:95465171-95485165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95470000-95470600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:95470000-95470600	Enhancers	HepG2	liver
3	chr10:95470000-95472200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:95470200-95470400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:95470200-95470600	Enhancers	Liver	Liver
6	chr10:95470200-95472000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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