Variant report

Variant	rs7094280
Chromosome Location	chr10:95484244-95484245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10444062	1.00[ASN][1000 genomes]
rs10882299	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs10882302	0.86[ASN][1000 genomes]
rs10882303	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs10882319	0.93[ASN][1000 genomes]
rs11187580	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs11187582	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11187583	0.86[ASN][1000 genomes]
rs11187584	0.86[ASN][1000 genomes]
rs11187585	0.86[ASN][1000 genomes]
rs11187596	1.00[CHD][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs11187599	1.00[ASN][1000 genomes]
rs11187616	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187620	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187644	0.85[ASN][1000 genomes]
rs1998840	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs45468996	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1054321	chr10:95465171-95485165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7094280	NUDT9P1	cis	parietal	SCAN
rs7094280	FRA10AC1	cis	cerebellum	SCAN
rs7094280	FRA10AC1	cis	parietal	SCAN
rs7094280	SORBS1	cis	cerebellum	SCAN
rs7094280	CEP55	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95480000-95484800	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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