Variant report

Variant	rs10882302
Chromosome Location	chr10:95449034-95449035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10444062	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882299	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187580	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187583	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187596	0.86[EUR][1000 genomes]
rs11187599	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187620	0.86[ASN][1000 genomes]
rs1998840	0.86[ASN][1000 genomes]
rs45468996	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094280	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047261	chr10:95384527-95449653	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv540746	chr10:95384527-95449653	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1050705	chr10:95384527-95469255	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv540747	chr10:95384527-95469255	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv522686	chr10:95440286-95471338	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10882302	FRA10AC1	cis	Artery Tibial	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95416600-95453800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:95417800-95461400	Weak transcription	Esophagus	oesophagus
3	chr10:95418400-95461400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:95418600-95460800	Weak transcription	Aorta	Aorta
5	chr10:95418600-95462000	Weak transcription	Spleen	Spleen
6	chr10:95418800-95451600	Weak transcription	Hela-S3	cervix
7	chr10:95420400-95458600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:95421600-95453600	Weak transcription	Pancreas	Pancrea
9	chr10:95422200-95451000	Weak transcription	Right Ventricle	heart
10	chr10:95424600-95456600	Weak transcription	Fetal Intestine Small	intestine
11	chr10:95424800-95453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:95425200-95461400	Weak transcription	K562	blood
13	chr10:95426000-95461400	Weak transcription	Colonic Mucosa	Colon
14	chr10:95427400-95456600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:95428800-95455400	Weak transcription	Brain Angular Gyrus	brain
16	chr10:95429000-95460600	Weak transcription	Small Intestine	intestine
17	chr10:95429200-95455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:95430600-95451400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:95430600-95456600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:95430600-95461200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:95432400-95461200	Weak transcription	Stomach Mucosa	stomach
22	chr10:95433800-95451400	Weak transcription	HMEC	breast
23	chr10:95434600-95455600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:95435400-95456600	Weak transcription	Brain Germinal Matrix	brain
25	chr10:95435600-95454000	Weak transcription	Fetal Stomach	stomach
26	chr10:95437200-95451800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:95437400-95451200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:95437800-95451400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:95438200-95452200	Weak transcription	Fetal Kidney	kidney
30	chr10:95438400-95450600	Weak transcription	HUVEC	blood vessel
31	chr10:95438400-95453800	Weak transcription	Brain Anterior Caudate	brain
32	chr10:95438600-95450600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:95438600-95451400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:95438600-95452000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:95438600-95453600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:95438600-95453600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr10:95438600-95455400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:95438600-95461200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:95438600-95461400	Weak transcription	Gastric	stomach
40	chr10:95438800-95450400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:95438800-95456400	Weak transcription	HSMMtube	muscle
42	chr10:95439000-95453600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:95439200-95450400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:95439200-95455600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:95439200-95460600	Weak transcription	NHLF	lung
46	chr10:95439200-95461400	Weak transcription	Lung	lung
47	chr10:95439400-95455600	Weak transcription	Ovary	ovary
48	chr10:95439600-95449200	Weak transcription	Fetal Intestine Large	intestine
49	chr10:95439600-95449600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:95439600-95450400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links