Variant report

Variant	rs11187620
Chromosome Location	chr10:95482673-95482674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10444062	1.00[ASN][1000 genomes]
rs10882299	0.86[ASN][1000 genomes]
rs10882302	0.86[ASN][1000 genomes]
rs10882303	0.86[ASN][1000 genomes]
rs10882319	0.93[ASN][1000 genomes]
rs11187580	0.86[ASN][1000 genomes]
rs11187582	0.86[ASN][1000 genomes]
rs11187583	0.86[ASN][1000 genomes]
rs11187584	0.86[ASN][1000 genomes]
rs11187585	0.86[ASN][1000 genomes]
rs11187596	0.93[ASN][1000 genomes]
rs11187599	1.00[ASN][1000 genomes]
rs11187616	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187644	0.85[ASN][1000 genomes]
rs1998840	1.00[ASN][1000 genomes]
rs45468996	0.86[ASN][1000 genomes]
rs7094280	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1054321	chr10:95465171-95485165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11187620	C10orf4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95479200-95482800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:95480000-95484800	Weak transcription	Fetal Brain Female	brain
3	chr10:95480800-95482800	Enhancers	HMEC	breast
4	chr10:95482000-95482800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:95482400-95482800	Enhancers	NHEK	skin
6	chr10:95482400-95483000	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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