Variant report

Variant	rs45468996
Chromosome Location	chr10:95434697-95434698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10444062	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882299	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882302	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882303	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187580	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187582	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187583	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187584	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187585	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187596	0.88[EUR][1000 genomes]
rs11187599	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187620	0.86[ASN][1000 genomes]
rs1998840	0.86[ASN][1000 genomes]
rs7094280	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047261	chr10:95384527-95449653	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv540746	chr10:95384527-95449653	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1050705	chr10:95384527-95469255	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv540747	chr10:95384527-95469255	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs45468996	FRA10AC1	cis	Artery Tibial	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95416600-95437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:95416600-95453800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:95417400-95438200	Weak transcription	Thymus	Thymus
4	chr10:95417800-95461400	Weak transcription	Esophagus	oesophagus
5	chr10:95418200-95437800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:95418400-95437000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:95418400-95461400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:95418600-95460800	Weak transcription	Aorta	Aorta
9	chr10:95418600-95462000	Weak transcription	Spleen	Spleen
10	chr10:95418800-95437200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:95418800-95451600	Weak transcription	Hela-S3	cervix
12	chr10:95419000-95437800	Weak transcription	Gastric	stomach
13	chr10:95419400-95445400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:95420400-95458600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:95421400-95439000	Weak transcription	Fetal Heart	heart
16	chr10:95421600-95453600	Weak transcription	Pancreas	Pancrea
17	chr10:95422200-95451000	Weak transcription	Right Ventricle	heart
18	chr10:95422600-95440400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:95422800-95437200	Weak transcription	Fetal Brain Male	brain
20	chr10:95422800-95441800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:95423200-95438200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:95423400-95437800	Weak transcription	Lung	lung
23	chr10:95424600-95456600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:95424800-95441200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:95424800-95453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:95425000-95436400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:95425000-95438000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:95425000-95441600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:95425000-95446000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr10:95425200-95461400	Weak transcription	K562	blood
31	chr10:95425600-95440800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr10:95425600-95441400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:95426000-95461400	Weak transcription	Colonic Mucosa	Colon
34	chr10:95426600-95440000	Strong transcription	Osteobl	bone
35	chr10:95426800-95441200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:95426800-95441200	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:95427000-95436200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:95427400-95456600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:95428600-95439200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:95428600-95444400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:95428800-95440800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:95428800-95455400	Weak transcription	Brain Angular Gyrus	brain
43	chr10:95429000-95460600	Weak transcription	Small Intestine	intestine
44	chr10:95429200-95437000	Weak transcription	HSMMtube	muscle
45	chr10:95429200-95455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:95430400-95437000	Weak transcription	Fetal Intestine Large	intestine
47	chr10:95430600-95437000	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:95430600-95437000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:95430600-95437200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:95430600-95437200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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