Variant report

Variant	rs11187582
Chromosome Location	chr10:95440240-95440241
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:95314553..95315223-chr10:95440160..95440841,2	K562	blood:
2	chr10:95314485..95315617-chr10:95439876..95440649,4	MCF-7	breast:
3	chr10:95301519..95302383-chr10:95439830..95440737,4	MCF-7	breast:
4	chr10:95301224..95301948-chr10:95439951..95440459,2	MCF-7	breast:
5	chr10:95434759..95436484-chr10:95439444..95441223,2	K562	blood:
6	chr10:95434915..95436614-chr10:95438819..95440992,2	MCF-7	breast:
7	chr10:95439071..95442072-chr10:95459371..95461736,3	MCF-7	breast:
8	chr10:95314209..95315199-chr10:95439863..95440407,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148690	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10444062	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187583	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187596	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11187599	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187620	0.86[ASN][1000 genomes]
rs1998840	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs45468996	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094280	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047261	chr10:95384527-95449653	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv540746	chr10:95384527-95449653	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1050705	chr10:95384527-95469255	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv540747	chr10:95384527-95469255	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11187582	FRA10AC1	cis	Artery Tibial	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95416600-95453800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:95417800-95461400	Weak transcription	Esophagus	oesophagus
3	chr10:95418400-95461400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:95418600-95460800	Weak transcription	Aorta	Aorta
5	chr10:95418600-95462000	Weak transcription	Spleen	Spleen
6	chr10:95418800-95451600	Weak transcription	Hela-S3	cervix
7	chr10:95419400-95445400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:95420400-95458600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:95421600-95453600	Weak transcription	Pancreas	Pancrea
10	chr10:95422200-95451000	Weak transcription	Right Ventricle	heart
11	chr10:95422600-95440400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:95422800-95441800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:95424600-95456600	Weak transcription	Fetal Intestine Small	intestine
14	chr10:95424800-95441200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:95424800-95453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:95425000-95441600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:95425000-95446000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr10:95425200-95461400	Weak transcription	K562	blood
19	chr10:95425600-95440800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:95425600-95441400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:95426000-95461400	Weak transcription	Colonic Mucosa	Colon
22	chr10:95426800-95441200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:95426800-95441200	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:95427400-95456600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:95428600-95444400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:95428800-95440800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:95428800-95455400	Weak transcription	Brain Angular Gyrus	brain
28	chr10:95429000-95460600	Weak transcription	Small Intestine	intestine
29	chr10:95429200-95455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:95430600-95451400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:95430600-95456600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:95430600-95461200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:95432000-95441200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:95432000-95441200	Strong transcription	NH-A	brain
35	chr10:95432000-95445600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:95432400-95441000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:95432400-95441200	Strong transcription	Placenta	Placenta
38	chr10:95432400-95461200	Weak transcription	Stomach Mucosa	stomach
39	chr10:95432600-95440800	Strong transcription	Fetal Lung	lung
40	chr10:95432600-95441000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr10:95432600-95442400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:95432800-95441000	Strong transcription	Dnd41	blood
43	chr10:95432800-95445200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:95433200-95441200	Strong transcription	HSMM	muscle
45	chr10:95433800-95444800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr10:95433800-95451400	Weak transcription	HMEC	breast
47	chr10:95434200-95441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:95434600-95455600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:95435200-95440400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:95435400-95456600	Weak transcription	Brain Germinal Matrix	brain

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