Variant report

Variant	rs11187583
Chromosome Location	chr10:95441272-95441273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95439071..95442072-chr10:95459371..95461736,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10444062	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882299	0.81[CEU][hapmap];0.84[GIH][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882303	0.81[CEU][hapmap];0.84[MKK][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187580	0.81[CEU][hapmap];0.84[GIH][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187582	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187596	0.81[CEU][hapmap];0.84[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs11187599	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187620	0.86[ASN][1000 genomes]
rs1998840	0.86[ASN][1000 genomes]
rs45468996	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094280	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047261	chr10:95384527-95449653	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv540746	chr10:95384527-95449653	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1050705	chr10:95384527-95469255	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv540747	chr10:95384527-95469255	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv522686	chr10:95440286-95471338	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11187583	FRA10AC1	cis	Artery Tibial	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95416600-95453800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:95417800-95461400	Weak transcription	Esophagus	oesophagus
3	chr10:95418400-95461400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:95418600-95460800	Weak transcription	Aorta	Aorta
5	chr10:95418600-95462000	Weak transcription	Spleen	Spleen
6	chr10:95418800-95451600	Weak transcription	Hela-S3	cervix
7	chr10:95419400-95445400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:95420400-95458600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:95421600-95453600	Weak transcription	Pancreas	Pancrea
10	chr10:95422200-95451000	Weak transcription	Right Ventricle	heart
11	chr10:95422800-95441800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:95424600-95456600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:95424800-95453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:95425000-95441600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:95425000-95446000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:95425200-95461400	Weak transcription	K562	blood
17	chr10:95425600-95441400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:95426000-95461400	Weak transcription	Colonic Mucosa	Colon
19	chr10:95427400-95456600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:95428600-95444400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:95428800-95455400	Weak transcription	Brain Angular Gyrus	brain
22	chr10:95429000-95460600	Weak transcription	Small Intestine	intestine
23	chr10:95429200-95455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:95430600-95451400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:95430600-95456600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:95430600-95461200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:95432000-95445600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:95432400-95461200	Weak transcription	Stomach Mucosa	stomach
29	chr10:95432600-95442400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:95432800-95445200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:95433800-95444800	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr10:95433800-95451400	Weak transcription	HMEC	breast
33	chr10:95434200-95441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:95434600-95455600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:95435400-95456600	Weak transcription	Brain Germinal Matrix	brain
36	chr10:95435600-95454000	Weak transcription	Fetal Stomach	stomach
37	chr10:95436000-95443600	Weak transcription	NHDF-Ad	bronchial
38	chr10:95436400-95441400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:95437000-95444800	Strong transcription	Primary T cells from cord blood	blood
40	chr10:95437200-95451800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:95437400-95451200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:95437800-95451400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:95438200-95452200	Weak transcription	Fetal Kidney	kidney
44	chr10:95438400-95443400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr10:95438400-95450600	Weak transcription	HUVEC	blood vessel
46	chr10:95438400-95453800	Weak transcription	Brain Anterior Caudate	brain
47	chr10:95438600-95441600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:95438600-95450600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:95438600-95451400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:95438600-95452000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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