Variant report

Variant	rs10882604
Chromosome Location	chr10:97249493-97249494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97237607..97239480-chr10:97249428..97252400,2	K562	blood:
2	chr10:97249137..97252026-chr10:97257407..97259761,2	K562	blood:
3	chr10:97249016..97250688-chr10:97324094..97327075,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10748632	0.84[EUR][1000 genomes]
rs10882603	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882606	0.88[YRI][hapmap]
rs1571131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1575948	0.89[EUR][1000 genomes]
rs1887228	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4328157	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4369330	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4572071	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97237200-97254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97240600-97253000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:97240800-97253400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97241400-97253600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:97241600-97254000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
9	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
10	chr10:97241800-97256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:97242000-97253800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:97242000-97256400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:97242600-97252200	Weak transcription	Pancreas	Pancrea
14	chr10:97242800-97256000	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:97243000-97253400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:97244200-97253200	Weak transcription	Lung	lung
17	chr10:97245200-97249800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:97245200-97251000	Genic enhancers	Stomach Smooth Muscle	stomach
19	chr10:97245200-97252200	Weak transcription	Gastric	stomach
20	chr10:97245400-97250400	Weak transcription	Stomach Mucosa	stomach
21	chr10:97245400-97252400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:97245400-97259200	Weak transcription	Brain Substantia Nigra	brain
23	chr10:97245400-97264600	Weak transcription	Ovary	ovary
24	chr10:97245800-97250600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:97245800-97254000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:97245800-97259400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:97246200-97250600	Weak transcription	Fetal Lung	lung
28	chr10:97246200-97256600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:97246400-97256000	Weak transcription	HSMMtube	muscle
30	chr10:97247000-97251000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:97247400-97250800	Weak transcription	Brain Angular Gyrus	brain
32	chr10:97247400-97259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:97247600-97253400	Weak transcription	Placenta	Placenta
34	chr10:97248200-97250000	Enhancers	Fetal Heart	heart
35	chr10:97248200-97251000	Enhancers	Psoas Muscle	Psoas
36	chr10:97248600-97249800	Strong transcription	Fetal Intestine Small	intestine
37	chr10:97248600-97250400	Weak transcription	Liver	Liver
38	chr10:97248600-97250400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:97249000-97249800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:97249000-97253200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:97249200-97249800	Strong transcription	Fetal Intestine Large	intestine
42	chr10:97249200-97249800	Enhancers	Spleen	Spleen
43	chr10:97249200-97250000	Genic enhancers	Aorta	Aorta
44	chr10:97249200-97250000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr10:97249200-97250800	Genic enhancers	Colon Smooth Muscle	Colon
46	chr10:97249200-97251000	Genic enhancers	Brain Anterior Caudate	brain
47	chr10:97249200-97251600	Genic enhancers	HepG2	liver
48	chr10:97249400-97249800	Genic enhancers	Left Ventricle	heart
49	chr10:97249400-97249800	Enhancers	Right Atrium	heart
50	chr10:97249400-97249800	Genic enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links