Variant report

Variant	rs1571131
Chromosome Location	chr10:97252314-97252315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97237607..97239480-chr10:97249428..97252400,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10748632	0.83[EUR][1000 genomes]
rs10882603	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882606	0.88[YRI][hapmap]
rs1575948	0.88[EUR][1000 genomes]
rs1887228	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4328157	0.89[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4369330	0.83[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4572071	0.88[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1571131	LMOD3	trans	cerebellum	SCAN
rs1571131	ZFYVE27	cis	parietal	SCAN

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97237200-97254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97240600-97253000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:97240800-97253400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97241400-97253600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:97241600-97254000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
9	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
10	chr10:97241800-97256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:97242000-97253800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:97242000-97256400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:97242800-97256000	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:97243000-97253400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:97244200-97253200	Weak transcription	Lung	lung
16	chr10:97245400-97252400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:97245400-97259200	Weak transcription	Brain Substantia Nigra	brain
18	chr10:97245400-97264600	Weak transcription	Ovary	ovary
19	chr10:97245800-97254000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:97245800-97259400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:97246200-97256600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:97246400-97256000	Weak transcription	HSMMtube	muscle
23	chr10:97247400-97259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:97247600-97253400	Weak transcription	Placenta	Placenta
25	chr10:97249000-97253200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:97249400-97261200	Weak transcription	Fetal Brain Female	brain
27	chr10:97249800-97252400	Weak transcription	Right Atrium	heart
28	chr10:97249800-97253200	Weak transcription	Fetal Intestine Large	intestine
29	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
30	chr10:97250000-97258800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:97250600-97253400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:97251000-97252400	Weak transcription	Psoas Muscle	Psoas
33	chr10:97251000-97252400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:97251000-97252400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:97251000-97253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:97251200-97254000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:97251400-97252600	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:97251400-97253400	Weak transcription	Brain Anterior Caudate	brain
40	chr10:97251600-97252400	Enhancers	Fetal Lung	lung
41	chr10:97251600-97253400	Weak transcription	HepG2	liver
42	chr10:97251800-97252600	Enhancers	Liver	Liver
43	chr10:97252200-97252800	Genic enhancers	Aorta	Aorta
44	chr10:97252200-97252800	Enhancers	Rectal Smooth Muscle	rectum
45	chr10:97252200-97253000	Strong transcription	Fetal Intestine Small	intestine
46	chr10:97252200-97253800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:97252200-97254200	Enhancers	Stomach Mucosa	stomach
48	chr10:97252200-97254400	Enhancers	Right Ventricle	heart
49	chr10:97252200-97254600	Enhancers	Brain Angular Gyrus	brain
50	chr10:97252200-97254600	Enhancers	Gastric	stomach

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