Variant report

Variant	rs10882606
Chromosome Location	chr10:97274387-97274388
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97272650..97274953-chr10:97291349..97294026,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10882603	0.94[YRI][hapmap]
rs10882604	0.88[YRI][hapmap]
rs10882608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882610	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882611	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188338	0.93[ASN][1000 genomes]
rs11188344	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188346	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188347	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188348	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188349	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11188358	0.89[EUR][1000 genomes]
rs12254959	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12776562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12776800	0.89[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1359722	0.88[ASN][1000 genomes]
rs1571131	0.88[YRI][hapmap]
rs1819288	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887226	0.88[EUR][1000 genomes]
rs1887228	0.88[YRI][hapmap]
rs35764302	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4369330	0.82[YRI][hapmap]
rs4572071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584004	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7918060	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7922126	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97262400-97275000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:97267600-97275000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:97269000-97277200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
7	chr10:97269200-97277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:97269400-97277200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97269600-97277200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:97270200-97274600	Enhancers	HepG2	liver
11	chr10:97270600-97278200	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:97270600-97278600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:97270600-97279200	Enhancers	Left Ventricle	heart
14	chr10:97270600-97279200	Enhancers	Right Atrium	heart
15	chr10:97270600-97279200	Enhancers	Stomach Mucosa	stomach
16	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97270800-97275000	Enhancers	Brain Cingulate Gyrus	brain
18	chr10:97270800-97275000	Enhancers	Brain Hippocampus Middle	brain
19	chr10:97270800-97275600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:97270800-97275800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr10:97271000-97274600	Enhancers	Brain Substantia Nigra	brain
22	chr10:97271000-97275200	Enhancers	Brain Angular Gyrus	brain
23	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
24	chr10:97271400-97275000	Enhancers	Liver	Liver
25	chr10:97271400-97275800	Weak transcription	Gastric	stomach
26	chr10:97271400-97279800	Enhancers	Fetal Muscle Leg	muscle
27	chr10:97271400-97279800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:97271600-97279800	Enhancers	Fetal Heart	heart
29	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:97272000-97274400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:97272000-97275600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:97272000-97277400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:97272000-97277400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:97272200-97275000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:97272200-97275600	Enhancers	Fetal Brain Male	brain
36	chr10:97272200-97276000	Enhancers	Psoas Muscle	Psoas
37	chr10:97272400-97274800	Enhancers	HSMMtube	muscle
38	chr10:97272400-97275000	Enhancers	Brain Germinal Matrix	brain
39	chr10:97272400-97277600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:97272600-97274400	Enhancers	Fetal Stomach	stomach
41	chr10:97272800-97274400	Enhancers	Duodenum Mucosa	Duodenum
42	chr10:97272800-97274800	Enhancers	Fetal Brain Female	brain
43	chr10:97272800-97278600	Enhancers	HUVEC	blood vessel
44	chr10:97273000-97274400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:97273000-97274400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:97273000-97277800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr10:97273200-97274400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:97273200-97274400	Enhancers	HMEC	breast
49	chr10:97273200-97274800	Enhancers	Brain Anterior Caudate	brain
50	chr10:97273200-97274800	Enhancers	HSMM	muscle

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