Variant report

Variant	rs12776800
Chromosome Location	chr10:97275278-97275279
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97274675..97276217-chr10:97279235..97281158,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10882606	0.89[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882608	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882609	0.83[JPT][hapmap]
rs10882610	1.00[CEU][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882611	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188343	0.83[ASN][1000 genomes]
rs11188344	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188346	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188347	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188348	0.88[EUR][1000 genomes]
rs11188358	0.84[EUR][1000 genomes]
rs12254959	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326932	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326934	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1819288	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1887226	0.83[EUR][1000 genomes]
rs35764302	0.84[EUR][1000 genomes]
rs4146489	0.87[JPT][hapmap]
rs4146490	0.82[JPT][hapmap]
rs4244316	0.83[JPT][hapmap]
rs4572071	0.89[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4917695	0.84[ASN][1000 genomes]
rs7918060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7922126	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:97269000-97277200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
5	chr10:97269200-97277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97269400-97277200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:97269600-97277200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:97270600-97278200	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:97270600-97278600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:97270600-97279200	Enhancers	Left Ventricle	heart
11	chr10:97270600-97279200	Enhancers	Right Atrium	heart
12	chr10:97270600-97279200	Enhancers	Stomach Mucosa	stomach
13	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:97270800-97275600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:97270800-97275800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
17	chr10:97271400-97275800	Weak transcription	Gastric	stomach
18	chr10:97271400-97279800	Enhancers	Fetal Muscle Leg	muscle
19	chr10:97271400-97279800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:97271600-97279800	Enhancers	Fetal Heart	heart
21	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:97272000-97275600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:97272000-97277400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:97272000-97277400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:97272200-97275600	Enhancers	Fetal Brain Male	brain
26	chr10:97272200-97276000	Enhancers	Psoas Muscle	Psoas
27	chr10:97272400-97277600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:97272800-97278600	Enhancers	HUVEC	blood vessel
29	chr10:97273000-97277800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:97273200-97275400	Weak transcription	Esophagus	oesophagus
31	chr10:97273200-97276200	Weak transcription	K562	blood
32	chr10:97273200-97277000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:97273200-97277200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:97273400-97277200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:97273400-97279800	Enhancers	Colon Smooth Muscle	Colon
36	chr10:97273600-97277000	Weak transcription	Fetal Intestine Large	intestine
37	chr10:97273600-97277200	Weak transcription	Ovary	ovary
38	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:97273800-97277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:97274000-97275800	Enhancers	Spleen	Spleen
41	chr10:97274000-97277000	Weak transcription	Colonic Mucosa	Colon
42	chr10:97274200-97275600	Weak transcription	Fetal Intestine Small	intestine
43	chr10:97274200-97277000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:97274200-97277200	Weak transcription	NH-A	brain
45	chr10:97274200-97278600	Weak transcription	Fetal Lung	lung
46	chr10:97274200-97279200	Enhancers	Pancreas	Pancrea
47	chr10:97274400-97276000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:97274400-97276800	Weak transcription	Fetal Stomach	stomach
49	chr10:97274400-97277600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:97274400-97277600	Weak transcription	Adipose Nuclei	Adipose

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